Results 41 - 60 of 192 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6352 | 5' | -56 | NC_001847.1 | + | 99961 | 0.71 | 0.594243 |
Target: 5'- cGCuCCUccUCgaagGCCGCGU--GCCCCCg -3' miRNA: 3'- aCG-GGA--AGaaa-CGGUGCAagCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 54090 | 0.71 | 0.614832 |
Target: 5'- gGCCCcgCccacGcCCACG-UCGCCCCCg -3' miRNA: 3'- aCGGGaaGaaa-C-GGUGCaAGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 27338 | 0.71 | 0.614832 |
Target: 5'- cGCCgcgCUUUGCCGCGgcCGCcgcagCCCCa -3' miRNA: 3'- aCGGgaaGAAACGGUGCaaGCG-----GGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 66928 | 0.71 | 0.62515 |
Target: 5'- gGCCCcgCcgcgGCC-CGUgCGCCCCCu -3' miRNA: 3'- aCGGGaaGaaa-CGGuGCAaGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 28970 | 0.71 | 0.635473 |
Target: 5'- aGCCUgcg---GCgCGCGUaCGCCCCCa -3' miRNA: 3'- aCGGGaagaaaCG-GUGCAaGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 94753 | 0.71 | 0.645794 |
Target: 5'- gGCgCgUCUUgGCCGgGgccgUCGCCCCCc -3' miRNA: 3'- aCGgGaAGAAaCGGUgCa---AGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 67061 | 0.7 | 0.686881 |
Target: 5'- cGCUCgcgcc-GCgGCGUUCGCCCCg -3' miRNA: 3'- aCGGGaagaaaCGgUGCAAGCGGGGg -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 91890 | 0.7 | 0.676656 |
Target: 5'- gUGCCCccCgggcGCCGCGccgcccgcgCGCCCCCa -3' miRNA: 3'- -ACGGGaaGaaa-CGGUGCaa-------GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 52657 | 0.7 | 0.676656 |
Target: 5'- cGCCCgcacg-GCCGCGggcUCGUCCCa -3' miRNA: 3'- aCGGGaagaaaCGGUGCa--AGCGGGGg -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 66285 | 0.7 | 0.666394 |
Target: 5'- gGCCCggCgcacgccGCCGCGcUCGCgCCCg -3' miRNA: 3'- aCGGGaaGaaa----CGGUGCaAGCGgGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 64065 | 0.7 | 0.676656 |
Target: 5'- cGCCCUggccgGCCGCc-UCGCCgCCCu -3' miRNA: 3'- aCGGGAagaaaCGGUGcaAGCGG-GGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 72343 | 0.7 | 0.656104 |
Target: 5'- gGCCCggCUUgUG-CGCGaucUCGCCCCCc -3' miRNA: 3'- aCGGGaaGAA-ACgGUGCa--AGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 31537 | 0.7 | 0.656104 |
Target: 5'- gUGCCCcaggCgUUUGUCGCGcgcaUGCCCCCg -3' miRNA: 3'- -ACGGGaa--G-AAACGGUGCaa--GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 134023 | 0.7 | 0.666394 |
Target: 5'- cGCCgCUggugCUggagGCCGCGgcggCGCCgCCCg -3' miRNA: 3'- aCGG-GAa---GAaa--CGGUGCaa--GCGG-GGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 31210 | 0.7 | 0.666394 |
Target: 5'- cGCCgCUggugCUggagGCCGCGgcggCGCCgCCCg -3' miRNA: 3'- aCGG-GAa---GAaa--CGGUGCaa--GCGG-GGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 104508 | 0.7 | 0.680751 |
Target: 5'- cGCCuCUUCggcggccGCCGCGUUUGCggcgcugcgcggcggCCCCg -3' miRNA: 3'- aCGG-GAAGaaa----CGGUGCAAGCG---------------GGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 118937 | 0.7 | 0.707183 |
Target: 5'- cGCCCUUCgcagacgGCCGCGagcaGCCCg- -3' miRNA: 3'- aCGGGAAGaaa----CGGUGCaag-CGGGgg -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 87059 | 0.7 | 0.69706 |
Target: 5'- cUGCagCUUCcgcGCgGCGUgCGCCCCCg -3' miRNA: 3'- -ACGg-GAAGaaaCGgUGCAaGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 120118 | 0.7 | 0.666394 |
Target: 5'- cGCCCggCg--GCCGCGgcucgcgCGgCCCCa -3' miRNA: 3'- aCGGGaaGaaaCGGUGCaa-----GCgGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 58741 | 0.7 | 0.676656 |
Target: 5'- gUGCCCcc----GCCGCGgcccccggCGCCCCCc -3' miRNA: 3'- -ACGGGaagaaaCGGUGCaa------GCGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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