miRNA display CGI


Results 41 - 60 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 5' -56 NC_001847.1 + 107142 0.78 0.28665
Target:  5'- gGCCgCUUCg--GCCGCGgcCGCCUCCg -3'
miRNA:   3'- aCGG-GAAGaaaCGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 106270 0.69 0.727226
Target:  5'- cGCCCacagcgcgUUCUgcgcgGCCAUGg-CGUCCCCg -3'
miRNA:   3'- aCGGG--------AAGAaa---CGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 106074 0.66 0.876724
Target:  5'- cGCCCgccaccGCCACGca-GCCCaCCg -3'
miRNA:   3'- aCGGGaagaaaCGGUGCaagCGGG-GG- -5'
6352 5' -56 NC_001847.1 + 105693 0.68 0.803306
Target:  5'- gGCgCUUCg--GCCGCGggcggcgccaCGCCCCa -3'
miRNA:   3'- aCGgGAAGaaaCGGUGCaa--------GCGGGGg -5'
6352 5' -56 NC_001847.1 + 105565 0.68 0.766236
Target:  5'- gGCCCggCgcgGCgGCGccggcgccggCGCCCCCg -3'
miRNA:   3'- aCGGGaaGaaaCGgUGCaa--------GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 105329 0.66 0.876724
Target:  5'- gGCCCUUCUUccuucccucgGaCC-CGgcggCGCUCCCg -3'
miRNA:   3'- aCGGGAAGAAa---------C-GGuGCaa--GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 104656 0.66 0.897429
Target:  5'- cGCCCgagg--GCCGCGccgaUCGCgUCCCa -3'
miRNA:   3'- aCGGGaagaaaCGGUGCa---AGCG-GGGG- -5'
6352 5' -56 NC_001847.1 + 104508 0.7 0.680751
Target:  5'- cGCCuCUUCggcggccGCCGCGUUUGCggcgcugcgcggcggCCCCg -3'
miRNA:   3'- aCGG-GAAGaaa----CGGUGCAAGCG---------------GGGG- -5'
6352 5' -56 NC_001847.1 + 104162 0.71 0.62515
Target:  5'- cGCCCUgcgCg--GCCAUGUccUUGCgCCCg -3'
miRNA:   3'- aCGGGAa--GaaaCGGUGCA--AGCGgGGG- -5'
6352 5' -56 NC_001847.1 + 103919 0.67 0.82093
Target:  5'- cGCCCcgCUUUcgcgcGcCCACGccgCGCCCUCa -3'
miRNA:   3'- aCGGGaaGAAA-----C-GGUGCaa-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 103520 0.71 0.594243
Target:  5'- cGUCUUUa-UUGCCGcCGUcgCGCCCCCu -3'
miRNA:   3'- aCGGGAAgaAACGGU-GCAa-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 101678 0.67 0.846039
Target:  5'- cGCCUcgaagCga-GCCAUGcUCGCCUCCa -3'
miRNA:   3'- aCGGGaa---GaaaCGGUGCaAGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 101623 0.67 0.854023
Target:  5'- cGCCCggCgccuCCGCGgcggCGCCCgCCg -3'
miRNA:   3'- aCGGGaaGaaacGGUGCaa--GCGGG-GG- -5'
6352 5' -56 NC_001847.1 + 101571 0.71 0.594243
Target:  5'- aGCCCgg----GCCGCGccagaCGCCCCCc -3'
miRNA:   3'- aCGGGaagaaaCGGUGCaa---GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 101257 0.68 0.794252
Target:  5'- cGCCCgcg---GCCACGcgcggcggCGCCUCCu -3'
miRNA:   3'- aCGGGaagaaaCGGUGCaa------GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 100471 0.66 0.876724
Target:  5'- cGCuCCUcCUgccGCUgcGCGgcCGCCCCCu -3'
miRNA:   3'- aCG-GGAaGAaa-CGG--UGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 100398 0.66 0.861803
Target:  5'- cGCCag-CUcgGCCGCGUcgaaggcggaguUCGCCUCg -3'
miRNA:   3'- aCGGgaaGAaaCGGUGCA------------AGCGGGGg -5'
6352 5' -56 NC_001847.1 + 99961 0.71 0.594243
Target:  5'- cGCuCCUccUCgaagGCCGCGU--GCCCCCg -3'
miRNA:   3'- aCG-GGA--AGaaa-CGGUGCAagCGGGGG- -5'
6352 5' -56 NC_001847.1 + 99859 0.76 0.36868
Target:  5'- cGCCCacgcaccgUUCUUaUGCCAgCGUUUGCaCCCCg -3'
miRNA:   3'- aCGGG--------AAGAA-ACGGU-GCAAGCG-GGGG- -5'
6352 5' -56 NC_001847.1 + 98359 0.66 0.883854
Target:  5'- aUGUCC-UCgggUGCCGCGUaaCGCgUCCa -3'
miRNA:   3'- -ACGGGaAGaa-ACGGUGCAa-GCGgGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.