miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 3' -54 NC_001847.1 + 31744 0.66 0.940849
Target:  5'- ---gGCCGCGG--AGGGCCAgGa--- -3'
miRNA:   3'- guaaUGGCGCCagUCCCGGUgCauuu -5'
6353 3' -54 NC_001847.1 + 125234 0.66 0.940849
Target:  5'- ----uCCGCGGgggCGGGGCC-CGa--- -3'
miRNA:   3'- guaauGGCGCCa--GUCCCGGuGCauuu -5'
6353 3' -54 NC_001847.1 + 105829 0.66 0.940849
Target:  5'- ---cACCGC-GUCGcGGGCCGCGc--- -3'
miRNA:   3'- guaaUGGCGcCAGU-CCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 36179 0.66 0.940849
Target:  5'- -cUUGCgGCGGUgcgCGGcgaGGCCGCGUAc- -3'
miRNA:   3'- guAAUGgCGCCA---GUC---CCGGUGCAUuu -5'
6353 3' -54 NC_001847.1 + 134557 0.66 0.940849
Target:  5'- ---gGCCGCGG--AGGGCCAgGa--- -3'
miRNA:   3'- guaaUGGCGCCagUCCCGGUgCauuu -5'
6353 3' -54 NC_001847.1 + 133534 0.66 0.940849
Target:  5'- --cUGCCGCGGcgCAGuGcGCCGCGc--- -3'
miRNA:   3'- guaAUGGCGCCa-GUC-C-CGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 30721 0.66 0.940849
Target:  5'- --cUGCCGCGGcgCAGuGcGCCGCGc--- -3'
miRNA:   3'- guaAUGGCGCCa-GUC-C-CGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 3016 0.66 0.940849
Target:  5'- ---cACCGC-GUCGcGGGCCGCGc--- -3'
miRNA:   3'- guaaUGGCGcCAGU-CCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 22421 0.66 0.940849
Target:  5'- ----uCCGCGGgggCGGGGCC-CGa--- -3'
miRNA:   3'- guaauGGCGCCa--GUCCCGGuGCauuu -5'
6353 3' -54 NC_001847.1 + 62735 0.66 0.940849
Target:  5'- ---gGCCGUGGccguccccgcgUCGGGGcCCGCGUc-- -3'
miRNA:   3'- guaaUGGCGCC-----------AGUCCC-GGUGCAuuu -5'
6353 3' -54 NC_001847.1 + 12380 0.66 0.935916
Target:  5'- ---gGCUGCGGccUCGGGG-CGCGUGu- -3'
miRNA:   3'- guaaUGGCGCC--AGUCCCgGUGCAUuu -5'
6353 3' -54 NC_001847.1 + 68464 0.66 0.935916
Target:  5'- ----cCCGCGGcCGGGGCCcCGc--- -3'
miRNA:   3'- guaauGGCGCCaGUCCCGGuGCauuu -5'
6353 3' -54 NC_001847.1 + 76411 0.66 0.935916
Target:  5'- ---gGCCGCGG-CGGGGgcaccCCGCGgcGGg -3'
miRNA:   3'- guaaUGGCGCCaGUCCC-----GGUGCauUU- -5'
6353 3' -54 NC_001847.1 + 24512 0.66 0.935916
Target:  5'- ---cGCCGUGGgcgUCGGGGCuCGCGc--- -3'
miRNA:   3'- guaaUGGCGCC---AGUCCCG-GUGCauuu -5'
6353 3' -54 NC_001847.1 + 99694 0.66 0.935916
Target:  5'- ---gGCgCGCGG-CGcGGGCCGcCGUAAAg -3'
miRNA:   3'- guaaUG-GCGCCaGU-CCCGGU-GCAUUU- -5'
6353 3' -54 NC_001847.1 + 80470 0.66 0.935916
Target:  5'- ---cGCCGCcGUC-GGGCCGCGc--- -3'
miRNA:   3'- guaaUGGCGcCAGuCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 44867 0.66 0.935916
Target:  5'- aCGUcGCCGCGccgcUCAaaGGCCGCGUGAAc -3'
miRNA:   3'- -GUAaUGGCGCc---AGUc-CCGGUGCAUUU- -5'
6353 3' -54 NC_001847.1 + 114745 0.66 0.935916
Target:  5'- --gUGCCgGCGGUCGcGGUCGCGg--- -3'
miRNA:   3'- guaAUGG-CGCCAGUcCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 117917 0.66 0.930729
Target:  5'- gGUUGaCGCGGUguGGGgCaACGUAAGc -3'
miRNA:   3'- gUAAUgGCGCCAguCCCgG-UGCAUUU- -5'
6353 3' -54 NC_001847.1 + 3702 0.66 0.930729
Target:  5'- aCAcgGCCGCGGgccccgCGGccGCCGCGUAGc -3'
miRNA:   3'- -GUaaUGGCGCCa-----GUCc-CGGUGCAUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.