miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 5' -62.7 NC_001847.1 + 37109 0.66 0.599487
Target:  5'- cGGCCcGCuGGUGuucauGCUCUGGG-GCGcGCAc -3'
miRNA:   3'- -CCGGaCG-CCAC-----CGAGGCUCuCGC-CGU- -5'
6353 5' -62.7 NC_001847.1 + 134510 0.66 0.599487
Target:  5'- gGGCCUcggggGCGGggggaGGCgcgggCCGcgcgccgcugcGGAGCGGCc -3'
miRNA:   3'- -CCGGA-----CGCCa----CCGa----GGC-----------UCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 111414 0.66 0.599487
Target:  5'- cGCCaGgGGcGGCgcucggCCGGGGGCGGgGg -3'
miRNA:   3'- cCGGaCgCCaCCGa-----GGCUCUCGCCgU- -5'
6353 5' -62.7 NC_001847.1 + 8601 0.66 0.599487
Target:  5'- cGCCaGgGGcGGCgcucggCCGGGGGCGGgGg -3'
miRNA:   3'- cCGGaCgCCaCCGa-----GGCUCUCGCCgU- -5'
6353 5' -62.7 NC_001847.1 + 123152 0.66 0.599487
Target:  5'- uGCgUGCGGUacGUUCCG-GAGaCGGCGc -3'
miRNA:   3'- cCGgACGCCAc-CGAGGCuCUC-GCCGU- -5'
6353 5' -62.7 NC_001847.1 + 66989 0.66 0.599487
Target:  5'- cGGgCUGCGGcgcGGCgCCGgAGAaGgGGCAg -3'
miRNA:   3'- -CCgGACGCCa--CCGaGGC-UCU-CgCCGU- -5'
6353 5' -62.7 NC_001847.1 + 13242 0.66 0.599487
Target:  5'- uGGCCaGCGG-GGC-CaCGcGGGCGGUu -3'
miRNA:   3'- -CCGGaCGCCaCCGaG-GCuCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 31697 0.66 0.599487
Target:  5'- gGGCCUcggggGCGGggggaGGCgcgggCCGcgcgccgcugcGGAGCGGCc -3'
miRNA:   3'- -CCGGA-----CGCCa----CCGa----GGC-----------UCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 111082 0.66 0.598501
Target:  5'- gGGCCUG-GGcccGGCUgCgCGAGAaggucgcGCGGCAc -3'
miRNA:   3'- -CCGGACgCCa--CCGA-G-GCUCU-------CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 117035 0.66 0.589642
Target:  5'- uGCCcgGCGGgGGCUcgCCGAGgaGGCGGa- -3'
miRNA:   3'- cCGGa-CGCCaCCGA--GGCUC--UCGCCgu -5'
6353 5' -62.7 NC_001847.1 + 69431 0.66 0.589642
Target:  5'- cGGCUcagcgcgGCGGUGGCg--GAcGGCGGCGc -3'
miRNA:   3'- -CCGGa------CGCCACCGaggCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 31793 0.66 0.589642
Target:  5'- cGGCCUGCcuuacggccGUGGCg--GuGGGCGGCGc -3'
miRNA:   3'- -CCGGACGc--------CACCGaggCuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 33787 0.66 0.588658
Target:  5'- gGGCUUcGCGG-GGCUgcgcgcggcgcCCGgcgcgcuGGAGCGGCu -3'
miRNA:   3'- -CCGGA-CGCCaCCGA-----------GGC-------UCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 31601 0.66 0.583748
Target:  5'- gGGCCcGCGGgaagggagggagggGGCg-CGAcGGCGGCAa -3'
miRNA:   3'- -CCGGaCGCCa-------------CCGagGCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 134414 0.66 0.583748
Target:  5'- gGGCCcGCGGgaagggagggagggGGCg-CGAcGGCGGCAa -3'
miRNA:   3'- -CCGGaCGCCa-------------CCGagGCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 29223 0.66 0.579825
Target:  5'- cGGCCgcgGCGGgccgcGGCcugCCGGccGCGGCc -3'
miRNA:   3'- -CCGGa--CGCCa----CCGa--GGCUcuCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 96460 0.66 0.579825
Target:  5'- aGGCgCUGCGGagaccaGGCU-UGcGGGCGGCGg -3'
miRNA:   3'- -CCG-GACGCCa-----CCGAgGCuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 2243 0.66 0.579825
Target:  5'- gGGCgCggGCGuGUGGUagUCCccGGGCGGCAc -3'
miRNA:   3'- -CCG-Ga-CGC-CACCG--AGGcuCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 84022 0.66 0.579825
Target:  5'- cGCCUGUGGUGGU--CGAcGGCGaGCu -3'
miRNA:   3'- cCGGACGCCACCGagGCUcUCGC-CGu -5'
6353 5' -62.7 NC_001847.1 + 80822 0.66 0.579825
Target:  5'- aGGCCgcgcgccgcgacUGgGGgGGCagaUCCGGGcGGCGGCGc -3'
miRNA:   3'- -CCGG------------ACgCCaCCG---AGGCUC-UCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.