miRNA display CGI


Results 61 - 80 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 120595 0.71 0.652655
Target:  5'- cCCGCGcuGCGgcGCGGUCAuacucCAGCCg- -3'
miRNA:   3'- -GGCGU--CGCaaCGCCAGUua---GUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 16636 0.71 0.632149
Target:  5'- gCGCGGCGgcuuUGCcGUCGG--GGCCCCg -3'
miRNA:   3'- gGCGUCGCa---ACGcCAGUUagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 73862 0.71 0.652655
Target:  5'- gCCGCGgugcGCGggGCGcGUCAGUUccgccggcGCCCCg -3'
miRNA:   3'- -GGCGU----CGCaaCGC-CAGUUAGu-------CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 58173 0.71 0.662887
Target:  5'- aCCGCGGCGggGUcGUCAA--AGCCgCCu -3'
miRNA:   3'- -GGCGUCGCaaCGcCAGUUagUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 69755 0.71 0.631123
Target:  5'- cCCGguGCGcgGCGGUCAagugcgcgcgaaaGUCAGCgggCUCg -3'
miRNA:   3'- -GGCguCGCaaCGCCAGU-------------UAGUCG---GGG- -5'
6354 5' -55.7 NC_001847.1 + 134581 0.71 0.673095
Target:  5'- gUCGCcGCcagGCaGGUCAAUCGuGCCCCc -3'
miRNA:   3'- -GGCGuCGcaaCG-CCAGUUAGU-CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 94613 0.71 0.673095
Target:  5'- gCCGCAGCacGUcGCGcGUCGcgcgCAGCCgCCg -3'
miRNA:   3'- -GGCGUCG--CAaCGC-CAGUua--GUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 80959 0.71 0.662887
Target:  5'- uCCGCgAGCGc-GCGGUCAAaguGCUCCg -3'
miRNA:   3'- -GGCG-UCGCaaCGCCAGUUaguCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 19336 0.71 0.673095
Target:  5'- gCCGCAGCGcagcgcGCGGagccgCAG-CGGCUCCg -3'
miRNA:   3'- -GGCGUCGCaa----CGCCa----GUUaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 16663 0.71 0.662887
Target:  5'- -gGCGGCGcggGCGcGUCGcgCAGCCUUg -3'
miRNA:   3'- ggCGUCGCaa-CGC-CAGUuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 64521 0.7 0.730369
Target:  5'- gCGCAGCGccUUGCccaucGUUAGcgccgucaccaaguUCAGCCCCg -3'
miRNA:   3'- gGCGUCGC--AACGc----CAGUU--------------AGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 116718 0.7 0.72345
Target:  5'- gCCGCGGCGcacGUGGcCAA--GGCCCUg -3'
miRNA:   3'- -GGCGUCGCaa-CGCCaGUUagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 27336 0.7 0.733321
Target:  5'- gCCGCcGCGcuuugccGCGGcCGccgCAGCCCCa -3'
miRNA:   3'- -GGCGuCGCaa-----CGCCaGUua-GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 29331 0.7 0.733321
Target:  5'- aCGCGGUGgagcgcgcGCGGcuccagCGcgCGGCCCCg -3'
miRNA:   3'- gGCGUCGCaa------CGCCa-----GUuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 118403 0.7 0.712501
Target:  5'- cUCGuCAGCGUcguggccgucgccUGCGGUC--UCGGCgCCg -3'
miRNA:   3'- -GGC-GUCGCA-------------ACGCCAGuuAGUCGgGG- -5'
6354 5' -55.7 NC_001847.1 + 61974 0.7 0.70348
Target:  5'- cCCGcCGGCGcgGCGGgcaUAAUgGGCCCg -3'
miRNA:   3'- -GGC-GUCGCaaCGCCa--GUUAgUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 42565 0.7 0.70348
Target:  5'- gCCGCguccuccucGGCGgcGCGGUUGAUCaAGCUCa -3'
miRNA:   3'- -GGCG---------UCGCaaCGCCAGUUAG-UCGGGg -5'
6354 5' -55.7 NC_001847.1 + 29455 0.7 0.6934
Target:  5'- gCGCGGCGcgGCGGcCcgcgcGUCGGCCUg -3'
miRNA:   3'- gGCGUCGCaaCGCCaGu----UAGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 6937 0.7 0.6934
Target:  5'- cCCGCAGUGcuuccGCGGUCccccUCcGCCCUg -3'
miRNA:   3'- -GGCGUCGCaa---CGCCAGuu--AGuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 78330 0.7 0.70348
Target:  5'- gCCGCgggcccggcuugGGCGccGCGGcggCGAaCAGCCCCu -3'
miRNA:   3'- -GGCG------------UCGCaaCGCCa--GUUaGUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.