miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6355 3' -60.6 NC_001847.1 + 100543 0.66 0.722721
Target:  5'- gGGUGG-GCGGGGAGcCGGCcGcggCGa -3'
miRNA:   3'- gCCGCCaCGCCCUUC-GCCGaCcaaGC- -5'
6355 3' -60.6 NC_001847.1 + 81228 0.66 0.722721
Target:  5'- uCGGCGGcagcgGCGGcGGGCcaGGCUGGg--- -3'
miRNA:   3'- -GCCGCCa----CGCCcUUCG--CCGACCaagc -5'
6355 3' -60.6 NC_001847.1 + 78369 0.66 0.722721
Target:  5'- aCGGCGG-GCGGGcaaucGCGGCgcaUGGc-CGa -3'
miRNA:   3'- -GCCGCCaCGCCCuu---CGCCG---ACCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 97723 0.66 0.722721
Target:  5'- uCGGCGGggGCagaagcGGAAGCGGC-GGcggCGg -3'
miRNA:   3'- -GCCGCCa-CGc-----CCUUCGCCGaCCaa-GC- -5'
6355 3' -60.6 NC_001847.1 + 116687 0.66 0.721759
Target:  5'- cCGGCGcUGCGGGcgcGGCaccgcacGGCUGGccgCGg -3'
miRNA:   3'- -GCCGCcACGCCCu--UCG-------CCGACCaa-GC- -5'
6355 3' -60.6 NC_001847.1 + 70507 0.66 0.716937
Target:  5'- aCGGCGGgcaucaagcagcggcUGCuGGGcGGCGuGCUGGcgCu -3'
miRNA:   3'- -GCCGCC---------------ACG-CCCuUCGC-CGACCaaGc -5'
6355 3' -60.6 NC_001847.1 + 4555 0.66 0.713066
Target:  5'- gGGUGGcgcgGCGuGGAAGUGGaagUGGUgCGg -3'
miRNA:   3'- gCCGCCa---CGC-CCUUCGCCg--ACCAaGC- -5'
6355 3' -60.6 NC_001847.1 + 134953 0.66 0.713066
Target:  5'- gGGCGGggGCGGGGgcGGgGGCcccgGGggCc -3'
miRNA:   3'- gCCGCCa-CGCCCU--UCgCCGa---CCaaGc -5'
6355 3' -60.6 NC_001847.1 + 32140 0.66 0.713066
Target:  5'- gGGCGGggGCGGGGgcGGgGGCcccgGGggCc -3'
miRNA:   3'- gCCGCCa-CGCCCU--UCgCCGa---CCaaGc -5'
6355 3' -60.6 NC_001847.1 + 64196 0.66 0.703346
Target:  5'- gCGGCGGgaacaugcGCGGGucggggugcccGGGCGGC-GGcgCGa -3'
miRNA:   3'- -GCCGCCa-------CGCCC-----------UUCGCCGaCCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 102678 0.66 0.703346
Target:  5'- gGGCGGggggGCGGGGcGGgGGCaGGgcgcCGg -3'
miRNA:   3'- gCCGCCa---CGCCCU-UCgCCGaCCaa--GC- -5'
6355 3' -60.6 NC_001847.1 + 12352 0.66 0.703346
Target:  5'- gCGGUGGgccugGCucGGGAgcgucGGCGGCUGcGgccUCGg -3'
miRNA:   3'- -GCCGCCa----CG--CCCU-----UCGCCGAC-Ca--AGC- -5'
6355 3' -60.6 NC_001847.1 + 18191 0.66 0.703346
Target:  5'- uGGCGGacgcGCGGcGAGGUcucgGGCUGGcggUCu -3'
miRNA:   3'- gCCGCCa---CGCC-CUUCG----CCGACCa--AGc -5'
6355 3' -60.6 NC_001847.1 + 16575 0.66 0.69357
Target:  5'- -cGCGGgacaGCGGGGucggGGCGGCguggGGUgccggCGa -3'
miRNA:   3'- gcCGCCa---CGCCCU----UCGCCGa---CCAa----GC- -5'
6355 3' -60.6 NC_001847.1 + 52898 0.66 0.683744
Target:  5'- uGGCcaguccuaGGUccGCGGGcAGCGGCUcGGggCGc -3'
miRNA:   3'- gCCG--------CCA--CGCCCuUCGCCGA-CCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 112088 0.66 0.683744
Target:  5'- cCGGCGGUcCGGcGcaAGGUGGaCUGGcUCGa -3'
miRNA:   3'- -GCCGCCAcGCC-C--UUCGCC-GACCaAGC- -5'
6355 3' -60.6 NC_001847.1 + 30656 0.66 0.681774
Target:  5'- aGGCGGUGCuGGcgcuguuGGAG-GGCUacccggaGGUUCGg -3'
miRNA:   3'- gCCGCCACG-CC-------CUUCgCCGA-------CCAAGC- -5'
6355 3' -60.6 NC_001847.1 + 14170 0.66 0.673879
Target:  5'- gGGCGGccGCGcuaaaggcacGGGAGgGGCUGGcggCGg -3'
miRNA:   3'- gCCGCCa-CGC----------CCUUCgCCGACCaa-GC- -5'
6355 3' -60.6 NC_001847.1 + 47049 0.66 0.673879
Target:  5'- -cGCGGUGCGuGucGCGGCcGGcgCGg -3'
miRNA:   3'- gcCGCCACGCcCuuCGCCGaCCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 115683 0.66 0.673879
Target:  5'- gGaGCGc-GCGGcGGAGCGGCUGGccCGg -3'
miRNA:   3'- gC-CGCcaCGCC-CUUCGCCGACCaaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.