miRNA display CGI


Results 1 - 20 of 111 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6355 5' -57.1 NC_001847.1 + 124490 1.1 0.001589
Target:  5'- gUUCAAGUCCAAGCGCUCCGCGUCCCCa -3'
miRNA:   3'- -AAGUUCAGGUUCGCGAGGCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 3648 0.79 0.189485
Target:  5'- -cCAGGUCCAccAGCGCcgcguacugcuuccCCGCGUCCCCc -3'
miRNA:   3'- aaGUUCAGGU--UCGCGa-------------GGCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 106461 0.79 0.189485
Target:  5'- -cCAGGUCCAccAGCGCcgcguacugcuuccCCGCGUCCCCc -3'
miRNA:   3'- aaGUUCAGGU--UCGCGa-------------GGCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 62162 0.77 0.258422
Target:  5'- -cCAGcUCCcgcgcGGGCGCgUCCGCGUCCCCa -3'
miRNA:   3'- aaGUUcAGG-----UUCGCG-AGGCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 78552 0.76 0.284241
Target:  5'- -gCGAGUCCcGGCGCUgccguUCGCGUCaCCCu -3'
miRNA:   3'- aaGUUCAGGuUCGCGA-----GGCGCAG-GGG- -5'
6355 5' -57.1 NC_001847.1 + 4400 0.76 0.297897
Target:  5'- ---cGGcCCAGGCGCugUCCGCGUCCuCCg -3'
miRNA:   3'- aaguUCaGGUUCGCG--AGGCGCAGG-GG- -5'
6355 5' -57.1 NC_001847.1 + 107213 0.76 0.297897
Target:  5'- ---cGGcCCAGGCGCugUCCGCGUCCuCCg -3'
miRNA:   3'- aaguUCaGGUUCGCG--AGGCGCAGG-GG- -5'
6355 5' -57.1 NC_001847.1 + 13386 0.76 0.312057
Target:  5'- -gCAcGUCCGGGCGCgCCGCGggCCCUg -3'
miRNA:   3'- aaGUuCAGGUUCGCGaGGCGCa-GGGG- -5'
6355 5' -57.1 NC_001847.1 + 25011 0.75 0.326721
Target:  5'- aUCGAGUCC-AGCaGCUUCaGCGcCCCCa -3'
miRNA:   3'- aAGUUCAGGuUCG-CGAGG-CGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 46872 0.75 0.349664
Target:  5'- -gCAGG-CgAAGCGCUCCcccCGUCCCCg -3'
miRNA:   3'- aaGUUCaGgUUCGCGAGGc--GCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 101067 0.75 0.357562
Target:  5'- -gCGGccgCCAcGCGCUCCGCGUgCCCCu -3'
miRNA:   3'- aaGUUca-GGUuCGCGAGGCGCA-GGGG- -5'
6355 5' -57.1 NC_001847.1 + 102921 0.74 0.381999
Target:  5'- --uGGGUCC-GGCGCcCCGCG-CCCCg -3'
miRNA:   3'- aagUUCAGGuUCGCGaGGCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 108 0.74 0.381999
Target:  5'- --uGGGUCC-GGCGCcCCGCG-CCCCg -3'
miRNA:   3'- aagUUCAGGuUCGCGaGGCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 24215 0.74 0.407523
Target:  5'- -cCAGGagCAGGCGCUCgGCGaUCUCCa -3'
miRNA:   3'- aaGUUCagGUUCGCGAGgCGC-AGGGG- -5'
6355 5' -57.1 NC_001847.1 + 118131 0.73 0.415386
Target:  5'- -gCGAGgCCGucugcgaGGCGCgCUGCGUCCCCg -3'
miRNA:   3'- aaGUUCaGGU-------UCGCGaGGCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 4466 0.73 0.434089
Target:  5'- -cCGcGUCCucGGCGCcccCCGCGUCCCUg -3'
miRNA:   3'- aaGUuCAGGu-UCGCGa--GGCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 107279 0.73 0.434089
Target:  5'- -cCGcGUCCucGGCGCcccCCGCGUCCCUg -3'
miRNA:   3'- aaGUuCAGGu-UCGCGa--GGCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 44805 0.73 0.452347
Target:  5'- --aAAGcgCCGAGCGCggcaCCGCG-CCCCa -3'
miRNA:   3'- aagUUCa-GGUUCGCGa---GGCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 86722 0.72 0.471017
Target:  5'- -cCGAGUacCCGAGCGCcggcgaCGCGUCCCg -3'
miRNA:   3'- aaGUUCA--GGUUCGCGag----GCGCAGGGg -5'
6355 5' -57.1 NC_001847.1 + 589 0.72 0.49007
Target:  5'- -cCGGGUCCuGGCcCUCCGCGgccgCUCCg -3'
miRNA:   3'- aaGUUCAGGuUCGcGAGGCGCa---GGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.