miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6355 5' -57.1 NC_001847.1 + 589 0.72 0.49007
Target:  5'- -cCGGGUCCuGGCcCUCCGCGgccgCUCCg -3'
miRNA:   3'- aaGUUCAGGuUCGcGAGGCGCa---GGGG- -5'
6355 5' -57.1 NC_001847.1 + 4965 0.72 0.49973
Target:  5'- cUUCAGG-CCGGGCGC-CCGCGgggucgugacgUCCUCg -3'
miRNA:   3'- -AAGUUCaGGUUCGCGaGGCGC-----------AGGGG- -5'
6355 5' -57.1 NC_001847.1 + 85897 0.71 0.529194
Target:  5'- gUCgAGGUCCAGGCGagCCGCGUCgCa -3'
miRNA:   3'- aAG-UUCAGGUUCGCgaGGCGCAGgGg -5'
6355 5' -57.1 NC_001847.1 + 39340 0.71 0.539159
Target:  5'- -cCGGGUCCAAgcaccaguagauGCGC-CCGCGccgCCCCc -3'
miRNA:   3'- aaGUUCAGGUU------------CGCGaGGCGCa--GGGG- -5'
6355 5' -57.1 NC_001847.1 + 62815 0.71 0.549187
Target:  5'- -gCAGcaCCAgcAGCGCgUCCGCGUCCaCCg -3'
miRNA:   3'- aaGUUcaGGU--UCGCG-AGGCGCAGG-GG- -5'
6355 5' -57.1 NC_001847.1 + 82714 0.71 0.549187
Target:  5'- -cCAGGUCCAuGUGCUCCacgcGCGggCCCa -3'
miRNA:   3'- aaGUUCAGGUuCGCGAGG----CGCagGGG- -5'
6355 5' -57.1 NC_001847.1 + 38141 0.71 0.559272
Target:  5'- -cCGAGUCUucGCGCggCGCGccgCCCCg -3'
miRNA:   3'- aaGUUCAGGuuCGCGagGCGCa--GGGG- -5'
6355 5' -57.1 NC_001847.1 + 126512 0.71 0.569409
Target:  5'- -cCGAGUCCGcAGCGg-CCGC-UCCCCc -3'
miRNA:   3'- aaGUUCAGGU-UCGCgaGGCGcAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 57921 0.7 0.579591
Target:  5'- -cCAAGUCCGGGCccgGCggcCCGCGgCUCCg -3'
miRNA:   3'- aaGUUCAGGUUCG---CGa--GGCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 54147 0.7 0.579591
Target:  5'- cUCcuGGUCCAgcAGCGCguccUCCGCGUCgUCa -3'
miRNA:   3'- aAGu-UCAGGU--UCGCG----AGGCGCAGgGG- -5'
6355 5' -57.1 NC_001847.1 + 32798 0.7 0.58674
Target:  5'- -gCGAGUCCGAGCGCUCUuugagcgcgcgcgaGCGcgcgaggCCCg -3'
miRNA:   3'- aaGUUCAGGUUCGCGAGG--------------CGCa------GGGg -5'
6355 5' -57.1 NC_001847.1 + 101301 0.7 0.58981
Target:  5'- ---cAGUCCucuGCGCUCUGCGcgCCCg -3'
miRNA:   3'- aaguUCAGGuu-CGCGAGGCGCa-GGGg -5'
6355 5' -57.1 NC_001847.1 + 123060 0.7 0.599034
Target:  5'- -gCGGGcgCCGgacccgcGGCGCUCCGCGgCCUCg -3'
miRNA:   3'- aaGUUCa-GGU-------UCGCGAGGCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 61578 0.7 0.60006
Target:  5'- cUCcguGUCCGAcGUGCUCCGCGacacgCCCg -3'
miRNA:   3'- aAGuu-CAGGUU-CGCGAGGCGCa----GGGg -5'
6355 5' -57.1 NC_001847.1 + 9040 0.7 0.610335
Target:  5'- -cCGAGcUCCu-GUGCUCCGCccCCCCg -3'
miRNA:   3'- aaGUUC-AGGuuCGCGAGGCGcaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 100454 0.7 0.610335
Target:  5'- -gCAAGUCCucgcgccAGCGCUCCuccugccgcugcGCGgccgCCCCc -3'
miRNA:   3'- aaGUUCAGGu------UCGCGAGG------------CGCa---GGGG- -5'
6355 5' -57.1 NC_001847.1 + 92072 0.7 0.610335
Target:  5'- -cCGAG-CCAgcAGCGC-CCGCGUUgCCg -3'
miRNA:   3'- aaGUUCaGGU--UCGCGaGGCGCAGgGG- -5'
6355 5' -57.1 NC_001847.1 + 84600 0.7 0.610335
Target:  5'- ---cGGUCCAgcAGCGCcgCUGCGUCgCCu -3'
miRNA:   3'- aaguUCAGGU--UCGCGa-GGCGCAGgGG- -5'
6355 5' -57.1 NC_001847.1 + 111853 0.7 0.610335
Target:  5'- -cCGAGcUCCu-GUGCUCCGCccCCCCg -3'
miRNA:   3'- aaGUUC-AGGuuCGCGAGGCGcaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 69128 0.7 0.620627
Target:  5'- -cCAGGUCC-AGCGCggccgCCgugGCGUgCCCg -3'
miRNA:   3'- aaGUUCAGGuUCGCGa----GG---CGCAgGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.