miRNA display CGI


Results 21 - 40 of 111 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6355 5' -57.1 NC_001847.1 + 21953 0.7 0.620627
Target:  5'- cUCGucGUCCGGGCGCUgggCCGCGgCgCCg -3'
miRNA:   3'- aAGUu-CAGGUUCGCGA---GGCGCaGgGG- -5'
6355 5' -57.1 NC_001847.1 + 24215 0.74 0.407523
Target:  5'- -cCAGGagCAGGCGCUCgGCGaUCUCCa -3'
miRNA:   3'- aaGUUCagGUUCGCGAGgCGC-AGGGG- -5'
6355 5' -57.1 NC_001847.1 + 25011 0.75 0.326721
Target:  5'- aUCGAGUCC-AGCaGCUUCaGCGcCCCCa -3'
miRNA:   3'- aAGUUCAGGuUCG-CGAGG-CGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 26312 0.69 0.661799
Target:  5'- -gCGAGUCguGGgGCa--GCGUCCCCa -3'
miRNA:   3'- aaGUUCAGguUCgCGaggCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 32798 0.7 0.58674
Target:  5'- -gCGAGUCCGAGCGCUCUuugagcgcgcgcgaGCGcgcgaggCCCg -3'
miRNA:   3'- aaGUUCAGGUUCGCGAGG--------------CGCa------GGGg -5'
6355 5' -57.1 NC_001847.1 + 36554 0.66 0.850142
Target:  5'- ----cGcCCAAGCGC-CgGCG-CCCCa -3'
miRNA:   3'- aaguuCaGGUUCGCGaGgCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 38141 0.71 0.559272
Target:  5'- -cCGAGUCUucGCGCggCGCGccgCCCCg -3'
miRNA:   3'- aaGUUCAGGuuCGCGagGCGCa--GGGG- -5'
6355 5' -57.1 NC_001847.1 + 39340 0.71 0.539159
Target:  5'- -cCGGGUCCAAgcaccaguagauGCGC-CCGCGccgCCCCc -3'
miRNA:   3'- aaGUUCAGGUU------------CGCGaGGCGCa--GGGG- -5'
6355 5' -57.1 NC_001847.1 + 39545 0.66 0.822808
Target:  5'- ----uGUCCAcguaagccucgaagGGCGCgUCCGCGaaggccgCCCCg -3'
miRNA:   3'- aaguuCAGGU--------------UCGCG-AGGCGCa------GGGG- -5'
6355 5' -57.1 NC_001847.1 + 39586 0.67 0.752133
Target:  5'- -cCAGGUggcCCcAGCGCUgCUGCGgcgcggCCCCa -3'
miRNA:   3'- aaGUUCA---GGuUCGCGA-GGCGCa-----GGGG- -5'
6355 5' -57.1 NC_001847.1 + 40110 0.68 0.732567
Target:  5'- gUUAcGUCCGAGCGCgccaCGacgaGUCCCUu -3'
miRNA:   3'- aAGUuCAGGUUCGCGag--GCg---CAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 41560 0.66 0.83382
Target:  5'- --aGAGUgCGAGCGCgUCGUGUCCg- -3'
miRNA:   3'- aagUUCAgGUUCGCGaGGCGCAGGgg -5'
6355 5' -57.1 NC_001847.1 + 42110 0.69 0.682274
Target:  5'- ----cGUCCAGGCGCcgggggCCGCuUCCCg -3'
miRNA:   3'- aaguuCAGGUUCGCGa-----GGCGcAGGGg -5'
6355 5' -57.1 NC_001847.1 + 43469 0.69 0.682274
Target:  5'- ---cGGUcgCCGAGCGCgcgaUCGCGUCCCg -3'
miRNA:   3'- aaguUCA--GGUUCGCGa---GGCGCAGGGg -5'
6355 5' -57.1 NC_001847.1 + 44805 0.73 0.452347
Target:  5'- --aAAGcgCCGAGCGCggcaCCGCG-CCCCa -3'
miRNA:   3'- aagUUCa-GGUUCGCGa---GGCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 45247 0.67 0.789905
Target:  5'- -aCAAccUCGGGCGC--CGCGUCCCCg -3'
miRNA:   3'- aaGUUcaGGUUCGCGagGCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 46254 0.66 0.849344
Target:  5'- cUCGGGUguggCCcAGCGCUcguguauguaccgCCGCGUCUCg -3'
miRNA:   3'- aAGUUCA----GGuUCGCGA-------------GGCGCAGGGg -5'
6355 5' -57.1 NC_001847.1 + 46780 0.69 0.682274
Target:  5'- ---cGGUCCGccGCGC-CCGCGcgCCCCu -3'
miRNA:   3'- aaguUCAGGUu-CGCGaGGCGCa-GGGG- -5'
6355 5' -57.1 NC_001847.1 + 46872 0.75 0.349664
Target:  5'- -gCAGG-CgAAGCGCUCCcccCGUCCCCg -3'
miRNA:   3'- aaGUUCaGgUUCGCGAGGc--GCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 48581 0.66 0.83382
Target:  5'- ----cGUCUucGGCGCcguccUCgGCGUCCCCc -3'
miRNA:   3'- aaguuCAGGu-UCGCG-----AGgCGCAGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.