miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6355 5' -57.1 NC_001847.1 + 103402 0.72 0.49007
Target:  5'- -cCGGGUCCuGGCcCUCCGCGgccgCUCCg -3'
miRNA:   3'- aaGUUCAGGuUCGcGAGGCGCa---GGGG- -5'
6355 5' -57.1 NC_001847.1 + 103136 0.66 0.825376
Target:  5'- --gGAG-CUucGCGCUccacgcCCGCGUCCCUc -3'
miRNA:   3'- aagUUCaGGuuCGCGA------GGCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 103101 0.67 0.780655
Target:  5'- -cCGAGcCCGcgcgGGCGCcguccCCGCG-CCCCg -3'
miRNA:   3'- aaGUUCaGGU----UCGCGa----GGCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 102921 0.74 0.381999
Target:  5'- --uGGGUCC-GGCGCcCCGCG-CCCCg -3'
miRNA:   3'- aagUUCAGGuUCGCGaGGCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 102239 0.69 0.645346
Target:  5'- -aCGGcGUCCAGGCGCUCgCGCGcggcgcgcaccgugCCCUc -3'
miRNA:   3'- aaGUU-CAGGUUCGCGAG-GCGCa-------------GGGG- -5'
6355 5' -57.1 NC_001847.1 + 102073 0.66 0.816755
Target:  5'- -gCAAGggCAGGCGCgggCCGCGcgcgaCCCg -3'
miRNA:   3'- aaGUUCagGUUCGCGa--GGCGCag---GGG- -5'
6355 5' -57.1 NC_001847.1 + 101398 0.68 0.722648
Target:  5'- -gCGcGUCCAGGCGCugguacagcUCUGCGcgucgcUCCCCc -3'
miRNA:   3'- aaGUuCAGGUUCGCG---------AGGCGC------AGGGG- -5'
6355 5' -57.1 NC_001847.1 + 101301 0.7 0.58981
Target:  5'- ---cAGUCCucuGCGCUCUGCGcgCCCg -3'
miRNA:   3'- aaguUCAGGuu-CGCGAGGCGCa-GGGg -5'
6355 5' -57.1 NC_001847.1 + 101067 0.75 0.357562
Target:  5'- -gCGGccgCCAcGCGCUCCGCGUgCCCCu -3'
miRNA:   3'- aaGUUca-GGUuCGCGAGGCGCA-GGGG- -5'
6355 5' -57.1 NC_001847.1 + 100454 0.7 0.610335
Target:  5'- -gCAAGUCCucgcgccAGCGCUCCuccugccgcugcGCGgccgCCCCc -3'
miRNA:   3'- aaGUUCAGGu------UCGCGAGG------------CGCa---GGGG- -5'
6355 5' -57.1 NC_001847.1 + 98585 0.66 0.816755
Target:  5'- --gAAGUCCAuuggggcgccGGCGCUUgggcggCGCGgcaCCCCg -3'
miRNA:   3'- aagUUCAGGU----------UCGCGAG------GCGCa--GGGG- -5'
6355 5' -57.1 NC_001847.1 + 97299 0.68 0.699549
Target:  5'- gUUUAGGUCCGaugacacggcggcaGGCGCgUCgGCGUCgcgCCCg -3'
miRNA:   3'- -AAGUUCAGGU--------------UCGCG-AGgCGCAG---GGG- -5'
6355 5' -57.1 NC_001847.1 + 96011 0.66 0.842077
Target:  5'- uUUCGAGcCCcAGCGCggCGCGUCggCCg -3'
miRNA:   3'- -AAGUUCaGGuUCGCGagGCGCAGg-GG- -5'
6355 5' -57.1 NC_001847.1 + 92072 0.7 0.610335
Target:  5'- -cCGAG-CCAgcAGCGC-CCGCGUUgCCg -3'
miRNA:   3'- aaGUUCaGGU--UCGCGaGGCGCAGgGG- -5'
6355 5' -57.1 NC_001847.1 + 91886 0.66 0.83382
Target:  5'- -gCAGGUgccccCCGGGCGCcgcgccgcCCGCGcgCCCCc -3'
miRNA:   3'- aaGUUCA-----GGUUCGCGa-------GGCGCa-GGGG- -5'
6355 5' -57.1 NC_001847.1 + 86722 0.72 0.471017
Target:  5'- -cCGAGUacCCGAGCGCcggcgaCGCGUCCCg -3'
miRNA:   3'- aaGUUCA--GGUUCGCGag----GCGCAGGGg -5'
6355 5' -57.1 NC_001847.1 + 85897 0.71 0.529194
Target:  5'- gUCgAGGUCCAGGCGagCCGCGUCgCa -3'
miRNA:   3'- aAG-UUCAGGUUCGCgaGGCGCAGgGg -5'
6355 5' -57.1 NC_001847.1 + 84600 0.7 0.610335
Target:  5'- ---cGGUCCAgcAGCGCcgCUGCGUCgCCu -3'
miRNA:   3'- aaguUCAGGU--UCGCGa-GGCGCAGgGG- -5'
6355 5' -57.1 NC_001847.1 + 83569 0.66 0.850142
Target:  5'- cUCGGGcuUCUgguAGGCGC-CCGCGagCCCg -3'
miRNA:   3'- aAGUUC--AGG---UUCGCGaGGCGCagGGG- -5'
6355 5' -57.1 NC_001847.1 + 83127 0.66 0.83382
Target:  5'- -gCGAGcgCUAGuGCGCgccugCUGCGUCCCg -3'
miRNA:   3'- aaGUUCa-GGUU-CGCGa----GGCGCAGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.