Results 21 - 40 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6355 | 5' | -57.1 | NC_001847.1 | + | 104706 | 0.66 | 0.83382 |
Target: 5'- cUCGugcAGcCCcGGCGcCUCCGCGcCCgCCa -3' miRNA: 3'- aAGU---UCaGGuUCGC-GAGGCGCaGG-GG- -5' |
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6355 | 5' | -57.1 | NC_001847.1 | + | 91886 | 0.66 | 0.83382 |
Target: 5'- -gCAGGUgccccCCGGGCGCcgcgccgcCCGCGcgCCCCc -3' miRNA: 3'- aaGUUCA-----GGUUCGCGa-------GGCGCa-GGGG- -5' |
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6355 | 5' | -57.1 | NC_001847.1 | + | 64844 | 0.66 | 0.83382 |
Target: 5'- -cCGAGaCCAgcgcGGCGCgCCGCGaCCCg -3' miRNA: 3'- aaGUUCaGGU----UCGCGaGGCGCaGGGg -5' |
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6355 | 5' | -57.1 | NC_001847.1 | + | 132881 | 0.66 | 0.850142 |
Target: 5'- aUUCGuucCCGAGgGCcgCCGCGUCaCCUg -3' miRNA: 3'- -AAGUucaGGUUCgCGa-GGCGCAG-GGG- -5' |
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6355 | 5' | -57.1 | NC_001847.1 | + | 41560 | 0.66 | 0.83382 |
Target: 5'- --aGAGUgCGAGCGCgUCGUGUCCg- -3' miRNA: 3'- aagUUCAgGUUCGCGaGGCGCAGGgg -5' |
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6355 | 5' | -57.1 | NC_001847.1 | + | 323 | 0.66 | 0.825376 |
Target: 5'- --gGAG-CUucGCGCUccacgcCCGCGUCCCUc -3' miRNA: 3'- aagUUCaGGuuCGCGA------GGCGCAGGGG- -5' |
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6355 | 5' | -57.1 | NC_001847.1 | + | 48581 | 0.66 | 0.83382 |
Target: 5'- ----cGUCUucGGCGCcguccUCgGCGUCCCCc -3' miRNA: 3'- aaguuCAGGu-UCGCG-----AGgCGCAGGGG- -5' |
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6355 | 5' | -57.1 | NC_001847.1 | + | 66752 | 0.66 | 0.825376 |
Target: 5'- ---uGG-CCGAGUGCUUCGUGUCgCUCg -3' miRNA: 3'- aaguUCaGGUUCGCGAGGCGCAG-GGG- -5' |
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6355 | 5' | -57.1 | NC_001847.1 | + | 66691 | 0.67 | 0.789905 |
Target: 5'- cUCGccUCCAcagcgGGCGCUcCCGCGccaugcugcuguUCCCCa -3' miRNA: 3'- aAGUucAGGU-----UCGCGA-GGCGC------------AGGGG- -5' |
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6355 | 5' | -57.1 | NC_001847.1 | + | 68454 | 0.67 | 0.752133 |
Target: 5'- --gAGGUCC--GCGC-CCGCGgccggggCCCCg -3' miRNA: 3'- aagUUCAGGuuCGCGaGGCGCa------GGGG- -5' |
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6355 | 5' | -57.1 | NC_001847.1 | + | 39586 | 0.67 | 0.752133 |
Target: 5'- -cCAGGUggcCCcAGCGCUgCUGCGgcgcggCCCCa -3' miRNA: 3'- aaGUUCA---GGuUCGCGA-GGCGCa-----GGGG- -5' |
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6355 | 5' | -57.1 | NC_001847.1 | + | 123878 | 0.67 | 0.789905 |
Target: 5'- aUUCAGGaagCCcAGCGC-CCGCGgcaagcUUCCCg -3' miRNA: 3'- -AAGUUCa--GGuUCGCGaGGCGC------AGGGG- -5' |
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6355 | 5' | -57.1 | NC_001847.1 | + | 2165 | 0.67 | 0.789905 |
Target: 5'- -cCAGGUCUcgcAGCGC-CCGCG-CCgCCu -3' miRNA: 3'- aaGUUCAGGu--UCGCGaGGCGCaGG-GG- -5' |
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6355 | 5' | -57.1 | NC_001847.1 | + | 103101 | 0.67 | 0.780655 |
Target: 5'- -cCGAGcCCGcgcgGGCGCcguccCCGCG-CCCCg -3' miRNA: 3'- aaGUUCaGGU----UCGCGa----GGCGCaGGGG- -5' |
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6355 | 5' | -57.1 | NC_001847.1 | + | 79972 | 0.67 | 0.799011 |
Target: 5'- --aAAGcUCCAGcGCGCcCCGCGUCUggCCg -3' miRNA: 3'- aagUUC-AGGUU-CGCGaGGCGCAGG--GG- -5' |
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6355 | 5' | -57.1 | NC_001847.1 | + | 121379 | 0.67 | 0.789905 |
Target: 5'- -gCAGGUUCAGGCugcccaucagccGCUgCGCGaucagCCCCa -3' miRNA: 3'- aaGUUCAGGUUCG------------CGAgGCGCa----GGGG- -5' |
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6355 | 5' | -57.1 | NC_001847.1 | + | 68792 | 0.67 | 0.771271 |
Target: 5'- -aCGGGgacgaucgCCAcggcGGCGC-CCGCG-CCCCa -3' miRNA: 3'- aaGUUCa-------GGU----UCGCGaGGCGCaGGGG- -5' |
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6355 | 5' | -57.1 | NC_001847.1 | + | 17123 | 0.67 | 0.771271 |
Target: 5'- -gCAGGuuUCCGcuGGCGCUCCcggcuuCGUCCUCg -3' miRNA: 3'- aaGUUC--AGGU--UCGCGAGGc-----GCAGGGG- -5' |
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6355 | 5' | -57.1 | NC_001847.1 | + | 288 | 0.67 | 0.780655 |
Target: 5'- -cCGAGcCCGcgcgGGCGCcguccCCGCG-CCCCg -3' miRNA: 3'- aaGUUCaGGU----UCGCGa----GGCGCaGGGG- -5' |
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6355 | 5' | -57.1 | NC_001847.1 | + | 57674 | 0.67 | 0.76176 |
Target: 5'- -cCGGG-CCGGGCGC-CCGgCGcccgCCCCa -3' miRNA: 3'- aaGUUCaGGUUCGCGaGGC-GCa---GGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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