miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6355 5' -57.1 NC_001847.1 + 123298 0.69 0.692453
Target:  5'- cUCAAGUCCAuccucCGCUagGCGcCCCCc -3'
miRNA:   3'- aAGUUCAGGUuc---GCGAggCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 106398 0.69 0.682274
Target:  5'- -gCAGGUCCGGGCccgcgaGCUUCGCG-CUCUg -3'
miRNA:   3'- aaGUUCAGGUUCG------CGAGGCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 4965 0.72 0.49973
Target:  5'- cUUCAGG-CCGGGCGC-CCGCGgggucgugacgUCCUCg -3'
miRNA:   3'- -AAGUUCaGGUUCGCGaGGCGC-----------AGGGG- -5'
6355 5' -57.1 NC_001847.1 + 107213 0.76 0.297897
Target:  5'- ---cGGcCCAGGCGCugUCCGCGUCCuCCg -3'
miRNA:   3'- aaguUCaGGUUCGCG--AGGCGCAGG-GG- -5'
6355 5' -57.1 NC_001847.1 + 79972 0.67 0.799011
Target:  5'- --aAAGcUCCAGcGCGCcCCGCGUCUggCCg -3'
miRNA:   3'- aagUUC-AGGUU-CGCGaGGCGCAGG--GG- -5'
6355 5' -57.1 NC_001847.1 + 68454 0.67 0.752133
Target:  5'- --gAGGUCC--GCGC-CCGCGgccggggCCCCg -3'
miRNA:   3'- aagUUCAGGuuCGCGaGGCGCa------GGGG- -5'
6355 5' -57.1 NC_001847.1 + 26312 0.69 0.661799
Target:  5'- -gCGAGUCguGGgGCa--GCGUCCCCa -3'
miRNA:   3'- aaGUUCAGguUCgCGaggCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 78552 0.76 0.284241
Target:  5'- -gCGAGUCCcGGCGCUgccguUCGCGUCaCCCu -3'
miRNA:   3'- aaGUUCAGGuUCGCGA-----GGCGCAG-GGG- -5'
6355 5' -57.1 NC_001847.1 + 107381 0.68 0.732567
Target:  5'- ----cGUCCucgcuGCuCUCCGCGUCCUCc -3'
miRNA:   3'- aaguuCAGGuu---CGcGAGGCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 62162 0.77 0.258422
Target:  5'- -cCAGcUCCcgcgcGGGCGCgUCCGCGUCCCCa -3'
miRNA:   3'- aaGUUcAGG-----UUCGCG-AGGCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 18724 0.69 0.661799
Target:  5'- cUCGAGcCCAAGCGCgcggcCCGgGgCCCa -3'
miRNA:   3'- aAGUUCaGGUUCGCGa----GGCgCaGGGg -5'
6355 5' -57.1 NC_001847.1 + 65795 0.69 0.692453
Target:  5'- uUUCGGGUCCGGaCGCUCCGCuagCUgCg -3'
miRNA:   3'- -AAGUUCAGGUUcGCGAGGCGca-GGgG- -5'
6355 5' -57.1 NC_001847.1 + 111853 0.7 0.610335
Target:  5'- -cCGAGcUCCu-GUGCUCCGCccCCCCg -3'
miRNA:   3'- aaGUUC-AGGuuCGCGAGGCGcaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 39340 0.71 0.539159
Target:  5'- -cCGGGUCCAAgcaccaguagauGCGC-CCGCGccgCCCCc -3'
miRNA:   3'- aaGUUCAGGUU------------CGCGaGGCGCa--GGGG- -5'
6355 5' -57.1 NC_001847.1 + 24215 0.74 0.407523
Target:  5'- -cCAGGagCAGGCGCUCgGCGaUCUCCa -3'
miRNA:   3'- aaGUUCagGUUCGCGAGgCGC-AGGGG- -5'
6355 5' -57.1 NC_001847.1 + 25011 0.75 0.326721
Target:  5'- aUCGAGUCC-AGCaGCUUCaGCGcCCCCa -3'
miRNA:   3'- aAGUUCAGGuUCG-CGAGG-CGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 98585 0.66 0.816755
Target:  5'- --gAAGUCCAuuggggcgccGGCGCUUgggcggCGCGgcaCCCCg -3'
miRNA:   3'- aagUUCAGGU----------UCGCGAG------GCGCa--GGGG- -5'
6355 5' -57.1 NC_001847.1 + 50063 0.66 0.807964
Target:  5'- -gCGGGUCCGcGCGCggCGCGgaCCCg -3'
miRNA:   3'- aaGUUCAGGUuCGCGagGCGCagGGG- -5'
6355 5' -57.1 NC_001847.1 + 103101 0.67 0.780655
Target:  5'- -cCGAGcCCGcgcgGGCGCcguccCCGCG-CCCCg -3'
miRNA:   3'- aaGUUCaGGU----UCGCGa----GGCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 39586 0.67 0.752133
Target:  5'- -cCAGGUggcCCcAGCGCUgCUGCGgcgcggCCCCa -3'
miRNA:   3'- aaGUUCA---GGuUCGCGA-GGCGCa-----GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.