miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6355 5' -57.1 NC_001847.1 + 123298 0.69 0.692453
Target:  5'- cUCAAGUCCAuccucCGCUagGCGcCCCCc -3'
miRNA:   3'- aAGUUCAGGUuc---GCGAggCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 106398 0.69 0.682274
Target:  5'- -gCAGGUCCGGGCccgcgaGCUUCGCG-CUCUg -3'
miRNA:   3'- aaGUUCAGGUUCG------CGAGGCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 111853 0.7 0.610335
Target:  5'- -cCGAGcUCCu-GUGCUCCGCccCCCCg -3'
miRNA:   3'- aaGUUC-AGGuuCGCGAGGCGcaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 39340 0.71 0.539159
Target:  5'- -cCGGGUCCAAgcaccaguagauGCGC-CCGCGccgCCCCc -3'
miRNA:   3'- aaGUUCAGGUU------------CGCGaGGCGCa--GGGG- -5'
6355 5' -57.1 NC_001847.1 + 24215 0.74 0.407523
Target:  5'- -cCAGGagCAGGCGCUCgGCGaUCUCCa -3'
miRNA:   3'- aaGUUCagGUUCGCGAGgCGC-AGGGG- -5'
6355 5' -57.1 NC_001847.1 + 25011 0.75 0.326721
Target:  5'- aUCGAGUCC-AGCaGCUUCaGCGcCCCCa -3'
miRNA:   3'- aAGUUCAGGuUCG-CGAGG-CGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 4466 0.73 0.434089
Target:  5'- -cCGcGUCCucGGCGCcccCCGCGUCCCUg -3'
miRNA:   3'- aaGUuCAGGu-UCGCGa--GGCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 118131 0.73 0.415386
Target:  5'- -gCGAGgCCGucugcgaGGCGCgCUGCGUCCCCg -3'
miRNA:   3'- aaGUUCaGGU-------UCGCGaGGCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 108 0.74 0.381999
Target:  5'- --uGGGUCC-GGCGCcCCGCG-CCCCg -3'
miRNA:   3'- aagUUCAGGuUCGCGaGGCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 44805 0.73 0.452347
Target:  5'- --aAAGcgCCGAGCGCggcaCCGCG-CCCCa -3'
miRNA:   3'- aagUUCa-GGUUCGCGa---GGCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 86722 0.72 0.471017
Target:  5'- -cCGAGUacCCGAGCGCcggcgaCGCGUCCCg -3'
miRNA:   3'- aaGUUCA--GGUUCGCGag----GCGCAGGGg -5'
6355 5' -57.1 NC_001847.1 + 589 0.72 0.49007
Target:  5'- -cCGGGUCCuGGCcCUCCGCGgccgCUCCg -3'
miRNA:   3'- aaGUUCAGGuUCGcGAGGCGCa---GGGG- -5'
6355 5' -57.1 NC_001847.1 + 6934 0.66 0.816755
Target:  5'- ---uGGcCCGcAGUGCuUCCGCGgUCCCCc -3'
miRNA:   3'- aaguUCaGGU-UCGCG-AGGCGC-AGGGG- -5'
6355 5' -57.1 NC_001847.1 + 85897 0.71 0.529194
Target:  5'- gUCgAGGUCCAGGCGagCCGCGUCgCa -3'
miRNA:   3'- aAG-UUCAGGUUCGCgaGGCGCAGgGg -5'
6355 5' -57.1 NC_001847.1 + 50499 0.68 0.732567
Target:  5'- -aCAucGcCCGAGCGCgcagcagCCGCGgcauggCCCCg -3'
miRNA:   3'- aaGUu-CaGGUUCGCGa------GGCGCa-----GGGG- -5'
6355 5' -57.1 NC_001847.1 + 40110 0.68 0.732567
Target:  5'- gUUAcGUCCGAGCGCgccaCGacgaGUCCCUu -3'
miRNA:   3'- aAGUuCAGGUUCGCGag--GCg---CAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 4568 0.68 0.732567
Target:  5'- ----cGUCCucgcuGCuCUCCGCGUCCUCc -3'
miRNA:   3'- aaguuCAGGuu---CGcGAGGCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 104706 0.66 0.83382
Target:  5'- cUCGugcAGcCCcGGCGcCUCCGCGcCCgCCa -3'
miRNA:   3'- aAGU---UCaGGuUCGC-GAGGCGCaGG-GG- -5'
6355 5' -57.1 NC_001847.1 + 101398 0.68 0.722648
Target:  5'- -gCGcGUCCAGGCGCugguacagcUCUGCGcgucgcUCCCCc -3'
miRNA:   3'- aaGUuCAGGUUCGCG---------AGGCGC------AGGGG- -5'
6355 5' -57.1 NC_001847.1 + 39545 0.66 0.822808
Target:  5'- ----uGUCCAcguaagccucgaagGGCGCgUCCGCGaaggccgCCCCg -3'
miRNA:   3'- aaguuCAGGU--------------UCGCG-AGGCGCa------GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.