miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6355 5' -57.1 NC_001847.1 + 21953 0.7 0.620627
Target:  5'- cUCGucGUCCGGGCGCUgggCCGCGgCgCCg -3'
miRNA:   3'- aAGUu-CAGGUUCGCGA---GGCGCaGgGG- -5'
6355 5' -57.1 NC_001847.1 + 17194 0.7 0.628866
Target:  5'- aUCGGGUcggCCAGGCccaGCUCUGCGgcgcuuacguugCCCCa -3'
miRNA:   3'- aAGUUCA---GGUUCG---CGAGGCGCa-----------GGGG- -5'
6355 5' -57.1 NC_001847.1 + 58712 0.69 0.641227
Target:  5'- --aAAGUCCGcGCGCgcgcucccgCCGCGgggugCCCCc -3'
miRNA:   3'- aagUUCAGGUuCGCGa--------GGCGCa----GGGG- -5'
6355 5' -57.1 NC_001847.1 + 79889 0.69 0.641227
Target:  5'- --aAAGgcgCCAAuGCGCUCgGCGUgcucCCCCa -3'
miRNA:   3'- aagUUCa--GGUU-CGCGAGgCGCA----GGGG- -5'
6355 5' -57.1 NC_001847.1 + 102239 0.69 0.645346
Target:  5'- -aCGGcGUCCAGGCGCUCgCGCGcggcgcgcaccgugCCCUc -3'
miRNA:   3'- aaGUU-CAGGUUCGCGAG-GCGCa-------------GGGG- -5'
6355 5' -57.1 NC_001847.1 + 18724 0.69 0.661799
Target:  5'- cUCGAGcCCAAGCGCgcggcCCGgGgCCCa -3'
miRNA:   3'- aAGUUCaGGUUCGCGa----GGCgCaGGGg -5'
6355 5' -57.1 NC_001847.1 + 26312 0.69 0.661799
Target:  5'- -gCGAGUCguGGgGCa--GCGUCCCCa -3'
miRNA:   3'- aaGUUCAGguUCgCGaggCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 43469 0.69 0.682274
Target:  5'- ---cGGUcgCCGAGCGCgcgaUCGCGUCCCg -3'
miRNA:   3'- aaguUCA--GGUUCGCGa---GGCGCAGGGg -5'
6355 5' -57.1 NC_001847.1 + 46780 0.69 0.682274
Target:  5'- ---cGGUCCGccGCGC-CCGCGcgCCCCu -3'
miRNA:   3'- aaguUCAGGUu-CGCGaGGCGCa-GGGG- -5'
6355 5' -57.1 NC_001847.1 + 3585 0.69 0.682274
Target:  5'- -gCAGGUCCGGGCccgcgaGCUUCGCG-CUCUg -3'
miRNA:   3'- aaGUUCAGGUUCG------CGAGGCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 106398 0.69 0.682274
Target:  5'- -gCAGGUCCGGGCccgcgaGCUUCGCG-CUCUg -3'
miRNA:   3'- aaGUUCAGGUUCG------CGAGGCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 42110 0.69 0.682274
Target:  5'- ----cGUCCAGGCGCcgggggCCGCuUCCCg -3'
miRNA:   3'- aaguuCAGGUUCGCGa-----GGCGcAGGGg -5'
6355 5' -57.1 NC_001847.1 + 69643 0.69 0.692453
Target:  5'- -gCGAGUCCcAGcCGCgCCGCGaCCCg -3'
miRNA:   3'- aaGUUCAGGuUC-GCGaGGCGCaGGGg -5'
6355 5' -57.1 NC_001847.1 + 123298 0.69 0.692453
Target:  5'- cUCAAGUCCAuccucCGCUagGCGcCCCCc -3'
miRNA:   3'- aAGUUCAGGUuc---GCGAggCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 65795 0.69 0.692453
Target:  5'- uUUCGGGUCCGGaCGCUCCGCuagCUgCg -3'
miRNA:   3'- -AAGUUCAGGUUcGCGAGGCGca-GGgG- -5'
6355 5' -57.1 NC_001847.1 + 97299 0.68 0.699549
Target:  5'- gUUUAGGUCCGaugacacggcggcaGGCGCgUCgGCGUCgcgCCCg -3'
miRNA:   3'- -AAGUUCAGGU--------------UCGCG-AGgCGCAG---GGG- -5'
6355 5' -57.1 NC_001847.1 + 78713 0.68 0.702581
Target:  5'- -gCGAGUgCGGGCGgucUUCCGCGacgcgguggcugUCCCCg -3'
miRNA:   3'- aaGUUCAgGUUCGC---GAGGCGC------------AGGGG- -5'
6355 5' -57.1 NC_001847.1 + 135059 0.68 0.702581
Target:  5'- ------cCCucGCGCUCCGCGcccaUCCCCc -3'
miRNA:   3'- aaguucaGGuuCGCGAGGCGC----AGGGG- -5'
6355 5' -57.1 NC_001847.1 + 117538 0.68 0.712649
Target:  5'- -aCGAGgCCGuGCGCaaccccuuUCCGCGggCCCCg -3'
miRNA:   3'- aaGUUCaGGUuCGCG--------AGGCGCa-GGGG- -5'
6355 5' -57.1 NC_001847.1 + 64429 0.68 0.712649
Target:  5'- ----uGUCCucGCGCUcgCCGCGggcgCCCCc -3'
miRNA:   3'- aaguuCAGGuuCGCGA--GGCGCa---GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.