miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6355 5' -57.1 NC_001847.1 + 50063 0.66 0.807964
Target:  5'- -gCGGGUCCGcGCGCggCGCGgaCCCg -3'
miRNA:   3'- aaGUUCAGGUuCGCGagGCGCagGGG- -5'
6355 5' -57.1 NC_001847.1 + 50499 0.68 0.732567
Target:  5'- -aCAucGcCCGAGCGCgcagcagCCGCGgcauggCCCCg -3'
miRNA:   3'- aaGUu-CaGGUUCGCGa------GGCGCa-----GGGG- -5'
6355 5' -57.1 NC_001847.1 + 54147 0.7 0.579591
Target:  5'- cUCcuGGUCCAgcAGCGCguccUCCGCGUCgUCa -3'
miRNA:   3'- aAGu-UCAGGU--UCGCG----AGGCGCAGgGG- -5'
6355 5' -57.1 NC_001847.1 + 54933 0.66 0.842077
Target:  5'- cUUGAGcgCCcuGCGCUUCGCGgcgCaCCCg -3'
miRNA:   3'- aAGUUCa-GGuuCGCGAGGCGCa--G-GGG- -5'
6355 5' -57.1 NC_001847.1 + 55582 0.67 0.752133
Target:  5'- -gCGAG-CCcGGCGCcccCCGCGagCCCCa -3'
miRNA:   3'- aaGUUCaGGuUCGCGa--GGCGCa-GGGG- -5'
6355 5' -57.1 NC_001847.1 + 57674 0.67 0.76176
Target:  5'- -cCGGG-CCGGGCGC-CCGgCGcccgCCCCa -3'
miRNA:   3'- aaGUUCaGGUUCGCGaGGC-GCa---GGGG- -5'
6355 5' -57.1 NC_001847.1 + 57921 0.7 0.579591
Target:  5'- -cCAAGUCCGGGCccgGCggcCCGCGgCUCCg -3'
miRNA:   3'- aaGUUCAGGUUCG---CGa--GGCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 58712 0.69 0.641227
Target:  5'- --aAAGUCCGcGCGCgcgcucccgCCGCGgggugCCCCc -3'
miRNA:   3'- aagUUCAGGUuCGCGa--------GGCGCa----GGGG- -5'
6355 5' -57.1 NC_001847.1 + 60433 0.66 0.842077
Target:  5'- cUCGGcGUCCAcGCGCgcgUCgGCGcugCCCCc -3'
miRNA:   3'- aAGUU-CAGGUuCGCG---AGgCGCa--GGGG- -5'
6355 5' -57.1 NC_001847.1 + 61003 0.67 0.752133
Target:  5'- gUCGAGgccgCCAucGGCGC-CgCGCGucacaUCCCCg -3'
miRNA:   3'- aAGUUCa---GGU--UCGCGaG-GCGC-----AGGGG- -5'
6355 5' -57.1 NC_001847.1 + 61578 0.7 0.60006
Target:  5'- cUCcguGUCCGAcGUGCUCCGCGacacgCCCg -3'
miRNA:   3'- aAGuu-CAGGUU-CGCGAGGCGCa----GGGg -5'
6355 5' -57.1 NC_001847.1 + 62162 0.77 0.258422
Target:  5'- -cCAGcUCCcgcgcGGGCGCgUCCGCGUCCCCa -3'
miRNA:   3'- aaGUUcAGG-----UUCGCG-AGGCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 62815 0.71 0.549187
Target:  5'- -gCAGcaCCAgcAGCGCgUCCGCGUCCaCCg -3'
miRNA:   3'- aaGUUcaGGU--UCGCG-AGGCGCAGG-GG- -5'
6355 5' -57.1 NC_001847.1 + 63244 0.67 0.770325
Target:  5'- -cCGGGUCCGccgcugcAGCGCcaucaCCGCGUCgcaguCCCa -3'
miRNA:   3'- aaGUUCAGGU-------UCGCGa----GGCGCAG-----GGG- -5'
6355 5' -57.1 NC_001847.1 + 64325 0.66 0.83382
Target:  5'- -aCGGGgaCUcGGCGCUCgGCGgaUCCCCu -3'
miRNA:   3'- aaGUUCa-GGuUCGCGAGgCGC--AGGGG- -5'
6355 5' -57.1 NC_001847.1 + 64429 0.68 0.712649
Target:  5'- ----uGUCCucGCGCUcgCCGCGggcgCCCCc -3'
miRNA:   3'- aaguuCAGGuuCGCGA--GGCGCa---GGGG- -5'
6355 5' -57.1 NC_001847.1 + 64749 0.66 0.807964
Target:  5'- --gAGGUCCGuaaucuuggccAGCGCgagCuCGCG-CCCCg -3'
miRNA:   3'- aagUUCAGGU-----------UCGCGa--G-GCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 64844 0.66 0.83382
Target:  5'- -cCGAGaCCAgcgcGGCGCgCCGCGaCCCg -3'
miRNA:   3'- aaGUUCaGGU----UCGCGaGGCGCaGGGg -5'
6355 5' -57.1 NC_001847.1 + 65795 0.69 0.692453
Target:  5'- uUUCGGGUCCGGaCGCUCCGCuagCUgCg -3'
miRNA:   3'- -AAGUUCAGGUUcGCGAGGCGca-GGgG- -5'
6355 5' -57.1 NC_001847.1 + 66691 0.67 0.789905
Target:  5'- cUCGccUCCAcagcgGGCGCUcCCGCGccaugcugcuguUCCCCa -3'
miRNA:   3'- aAGUucAGGU-----UCGCGA-GGCGC------------AGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.