miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6355 5' -57.1 NC_001847.1 + 288 0.67 0.780655
Target:  5'- -cCGAGcCCGcgcgGGCGCcguccCCGCG-CCCCg -3'
miRNA:   3'- aaGUUCaGGU----UCGCGa----GGCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 17123 0.67 0.771271
Target:  5'- -gCAGGuuUCCGcuGGCGCUCCcggcuuCGUCCUCg -3'
miRNA:   3'- aaGUUC--AGGU--UCGCGAGGc-----GCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 63244 0.67 0.770325
Target:  5'- -cCGGGUCCGccgcugcAGCGCcaucaCCGCGUCgcaguCCCa -3'
miRNA:   3'- aaGUUCAGGU-------UCGCGa----GGCGCAG-----GGG- -5'
6355 5' -57.1 NC_001847.1 + 57674 0.67 0.76176
Target:  5'- -cCGGG-CCGGGCGC-CCGgCGcccgCCCCa -3'
miRNA:   3'- aaGUUCaGGUUCGCGaGGC-GCa---GGGG- -5'
6355 5' -57.1 NC_001847.1 + 115043 0.68 0.742399
Target:  5'- -gCGAGUCCGGGgcagaGCUCCagcugGCGcucgCCCCg -3'
miRNA:   3'- aaGUUCAGGUUCg----CGAGG-----CGCa---GGGG- -5'
6355 5' -57.1 NC_001847.1 + 97299 0.68 0.699549
Target:  5'- gUUUAGGUCCGaugacacggcggcaGGCGCgUCgGCGUCgcgCCCg -3'
miRNA:   3'- -AAGUUCAGGU--------------UCGCG-AGgCGCAG---GGG- -5'
6355 5' -57.1 NC_001847.1 + 82438 0.68 0.742399
Target:  5'- -cCAGGUCgGGGCGCUUggcuccaggCGCGgcgggcccggCCCCg -3'
miRNA:   3'- aaGUUCAGgUUCGCGAG---------GCGCa---------GGGG- -5'
6355 5' -57.1 NC_001847.1 + 50499 0.68 0.732567
Target:  5'- -aCAucGcCCGAGCGCgcagcagCCGCGgcauggCCCCg -3'
miRNA:   3'- aaGUu-CaGGUUCGCGa------GGCGCa-----GGGG- -5'
6355 5' -57.1 NC_001847.1 + 101398 0.68 0.722648
Target:  5'- -gCGcGUCCAGGCGCugguacagcUCUGCGcgucgcUCCCCc -3'
miRNA:   3'- aaGUuCAGGUUCGCG---------AGGCGC------AGGGG- -5'
6355 5' -57.1 NC_001847.1 + 135059 0.68 0.702581
Target:  5'- ------cCCucGCGCUCCGCGcccaUCCCCc -3'
miRNA:   3'- aaguucaGGuuCGCGAGGCGC----AGGGG- -5'
6355 5' -57.1 NC_001847.1 + 117538 0.68 0.712649
Target:  5'- -aCGAGgCCGuGCGCaaccccuuUCCGCGggCCCCg -3'
miRNA:   3'- aaGUUCaGGUuCGCG--------AGGCGCa-GGGG- -5'
6355 5' -57.1 NC_001847.1 + 78713 0.68 0.702581
Target:  5'- -gCGAGUgCGGGCGgucUUCCGCGacgcgguggcugUCCCCg -3'
miRNA:   3'- aaGUUCAgGUUCGC---GAGGCGC------------AGGGG- -5'
6355 5' -57.1 NC_001847.1 + 64429 0.68 0.712649
Target:  5'- ----uGUCCucGCGCUcgCCGCGggcgCCCCc -3'
miRNA:   3'- aaguuCAGGuuCGCGA--GGCGCa---GGGG- -5'
6355 5' -57.1 NC_001847.1 + 107381 0.68 0.732567
Target:  5'- ----cGUCCucgcuGCuCUCCGCGUCCUCc -3'
miRNA:   3'- aaguuCAGGuu---CGcGAGGCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 4568 0.68 0.732567
Target:  5'- ----cGUCCucgcuGCuCUCCGCGUCCUCc -3'
miRNA:   3'- aaguuCAGGuu---CGcGAGGCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 40110 0.68 0.732567
Target:  5'- gUUAcGUCCGAGCGCgccaCGacgaGUCCCUu -3'
miRNA:   3'- aAGUuCAGGUUCGCGag--GCg---CAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 43469 0.69 0.682274
Target:  5'- ---cGGUcgCCGAGCGCgcgaUCGCGUCCCg -3'
miRNA:   3'- aaguUCA--GGUUCGCGa---GGCGCAGGGg -5'
6355 5' -57.1 NC_001847.1 + 18724 0.69 0.661799
Target:  5'- cUCGAGcCCAAGCGCgcggcCCGgGgCCCa -3'
miRNA:   3'- aAGUUCaGGUUCGCGa----GGCgCaGGGg -5'
6355 5' -57.1 NC_001847.1 + 26312 0.69 0.661799
Target:  5'- -gCGAGUCguGGgGCa--GCGUCCCCa -3'
miRNA:   3'- aaGUUCAGguUCgCGaggCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 79889 0.69 0.641227
Target:  5'- --aAAGgcgCCAAuGCGCUCgGCGUgcucCCCCa -3'
miRNA:   3'- aagUUCa--GGUU-CGCGAGgCGCA----GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.