miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6355 5' -57.1 NC_001847.1 + 135059 0.68 0.702581
Target:  5'- ------cCCucGCGCUCCGCGcccaUCCCCc -3'
miRNA:   3'- aaguucaGGuuCGCGAGGCGC----AGGGG- -5'
6355 5' -57.1 NC_001847.1 + 132881 0.66 0.850142
Target:  5'- aUUCGuucCCGAGgGCcgCCGCGUCaCCUg -3'
miRNA:   3'- -AAGUucaGGUUCgCGa-GGCGCAG-GGG- -5'
6355 5' -57.1 NC_001847.1 + 126512 0.71 0.569409
Target:  5'- -cCGAGUCCGcAGCGg-CCGC-UCCCCc -3'
miRNA:   3'- aaGUUCAGGU-UCGCgaGGCGcAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 124490 1.1 0.001589
Target:  5'- gUUCAAGUCCAAGCGCUCCGCGUCCCCa -3'
miRNA:   3'- -AAGUUCAGGUUCGCGAGGCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 123878 0.67 0.789905
Target:  5'- aUUCAGGaagCCcAGCGC-CCGCGgcaagcUUCCCg -3'
miRNA:   3'- -AAGUUCa--GGuUCGCGaGGCGC------AGGGG- -5'
6355 5' -57.1 NC_001847.1 + 123298 0.69 0.692453
Target:  5'- cUCAAGUCCAuccucCGCUagGCGcCCCCc -3'
miRNA:   3'- aAGUUCAGGUuc---GCGAggCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 123060 0.7 0.599034
Target:  5'- -gCGGGcgCCGgacccgcGGCGCUCCGCGgCCUCg -3'
miRNA:   3'- aaGUUCa-GGU-------UCGCGAGGCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 121379 0.67 0.789905
Target:  5'- -gCAGGUUCAGGCugcccaucagccGCUgCGCGaucagCCCCa -3'
miRNA:   3'- aaGUUCAGGUUCG------------CGAgGCGCa----GGGG- -5'
6355 5' -57.1 NC_001847.1 + 121051 0.66 0.850142
Target:  5'- ---uGGUCCGccAGCGcCUCCGCGaUgUCCa -3'
miRNA:   3'- aaguUCAGGU--UCGC-GAGGCGC-AgGGG- -5'
6355 5' -57.1 NC_001847.1 + 118131 0.73 0.415386
Target:  5'- -gCGAGgCCGucugcgaGGCGCgCUGCGUCCCCg -3'
miRNA:   3'- aaGUUCaGGU-------UCGCGaGGCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 117538 0.68 0.712649
Target:  5'- -aCGAGgCCGuGCGCaaccccuuUCCGCGggCCCCg -3'
miRNA:   3'- aaGUUCaGGUuCGCG--------AGGCGCa-GGGG- -5'
6355 5' -57.1 NC_001847.1 + 115043 0.68 0.742399
Target:  5'- -gCGAGUCCGGGgcagaGCUCCagcugGCGcucgCCCCg -3'
miRNA:   3'- aaGUUCAGGUUCg----CGAGG-----CGCa---GGGG- -5'
6355 5' -57.1 NC_001847.1 + 111853 0.7 0.610335
Target:  5'- -cCGAGcUCCu-GUGCUCCGCccCCCCg -3'
miRNA:   3'- aaGUUC-AGGuuCGCGAGGCGcaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 109747 0.66 0.816755
Target:  5'- ---uGGcCCGcAGUGCuUCCGCGgUCCCCc -3'
miRNA:   3'- aaguUCaGGU-UCGCG-AGGCGC-AGGGG- -5'
6355 5' -57.1 NC_001847.1 + 107381 0.68 0.732567
Target:  5'- ----cGUCCucgcuGCuCUCCGCGUCCUCc -3'
miRNA:   3'- aaguuCAGGuu---CGcGAGGCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 107279 0.73 0.434089
Target:  5'- -cCGcGUCCucGGCGCcccCCGCGUCCCUg -3'
miRNA:   3'- aaGUuCAGGu-UCGCGa--GGCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 107213 0.76 0.297897
Target:  5'- ---cGGcCCAGGCGCugUCCGCGUCCuCCg -3'
miRNA:   3'- aaguUCaGGUUCGCG--AGGCGCAGG-GG- -5'
6355 5' -57.1 NC_001847.1 + 106461 0.79 0.189485
Target:  5'- -cCAGGUCCAccAGCGCcgcguacugcuuccCCGCGUCCCCc -3'
miRNA:   3'- aaGUUCAGGU--UCGCGa-------------GGCGCAGGGG- -5'
6355 5' -57.1 NC_001847.1 + 106398 0.69 0.682274
Target:  5'- -gCAGGUCCGGGCccgcgaGCUUCGCG-CUCUg -3'
miRNA:   3'- aaGUUCAGGUUCG------CGAGGCGCaGGGG- -5'
6355 5' -57.1 NC_001847.1 + 104706 0.66 0.83382
Target:  5'- cUCGugcAGcCCcGGCGcCUCCGCGcCCgCCa -3'
miRNA:   3'- aAGU---UCaGGuUCGC-GAGGCGCaGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.