miRNA display CGI


Results 1 - 20 of 601 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6356 3' -61.4 NC_001847.1 + 135082 0.66 0.674877
Target:  5'- cGGGCCCGcCGcGCCGaaaUUUCCGCc- -3'
miRNA:   3'- -UCCGGGC-GCaUGGCgagAAGGGCGcg -5'
6356 3' -61.4 NC_001847.1 + 134848 0.66 0.665023
Target:  5'- gGGGCgCGgGgACgGCg---CCCGCGCg -3'
miRNA:   3'- -UCCGgGCgCaUGgCGagaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 134249 0.7 0.418962
Target:  5'- cGGCCgGCG-GCCGCggCggCCCcgGCGCg -3'
miRNA:   3'- uCCGGgCGCaUGGCGa-GaaGGG--CGCG- -5'
6356 3' -61.4 NC_001847.1 + 134185 0.72 0.304052
Target:  5'- cGGCCCGgGUGCCgGCgcagucgUCCCcggGCGCg -3'
miRNA:   3'- uCCGGGCgCAUGG-CGaga----AGGG---CGCG- -5'
6356 3' -61.4 NC_001847.1 + 134141 0.66 0.674877
Target:  5'- cGGCCugguggagCGCGUGCCGCcg--CCgGCGg -3'
miRNA:   3'- uCCGG--------GCGCAUGGCGagaaGGgCGCg -5'
6356 3' -61.4 NC_001847.1 + 134095 0.71 0.362144
Target:  5'- aGGGCCCGCGggagaCGCUCgUgCUGCuGCg -3'
miRNA:   3'- -UCCGGGCGCaug--GCGAGaAgGGCG-CG- -5'
6356 3' -61.4 NC_001847.1 + 134053 0.69 0.471743
Target:  5'- -cGCCCGCG-GCCGCggcgCCCgGCGUg -3'
miRNA:   3'- ucCGGGCGCaUGGCGagaaGGG-CGCG- -5'
6356 3' -61.4 NC_001847.1 + 133978 0.66 0.645247
Target:  5'- uGGCCUucuGCGcgGCCGCgCUgccggagCCGCGCg -3'
miRNA:   3'- uCCGGG---CGCa-UGGCGaGAag-----GGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 133921 0.66 0.665023
Target:  5'- uGGCCUGCGggcgGCgCGCgCUggagCUgGCGCc -3'
miRNA:   3'- uCCGGGCGCa---UG-GCGaGAa---GGgCGCG- -5'
6356 3' -61.4 NC_001847.1 + 133889 0.67 0.615529
Target:  5'- gGGGCUCgGCGcGCCGCUgCggCCgGUGUa -3'
miRNA:   3'- -UCCGGG-CGCaUGGCGA-GaaGGgCGCG- -5'
6356 3' -61.4 NC_001847.1 + 133724 0.76 0.195298
Target:  5'- uGGGCCCGCc-ACCGCggugCCCGUGCc -3'
miRNA:   3'- -UCCGGGCGcaUGGCGagaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 133663 0.67 0.595763
Target:  5'- gAGGCgCCGCcgcUGCgGCUCUg-CCGCGg -3'
miRNA:   3'- -UCCG-GGCGc--AUGgCGAGAagGGCGCg -5'
6356 3' -61.4 NC_001847.1 + 133611 0.67 0.585915
Target:  5'- cGGCCCGgG---CGC-CUUCgCGCGCg -3'
miRNA:   3'- uCCGGGCgCaugGCGaGAAGgGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 133049 0.71 0.39395
Target:  5'- cGGCCCGCc-GCCGCgCgggcCCCGCGg -3'
miRNA:   3'- uCCGGGCGcaUGGCGaGaa--GGGCGCg -5'
6356 3' -61.4 NC_001847.1 + 132970 0.78 0.128427
Target:  5'- cGGCUCGCGgaccacCCGCUCUUCCCcgagcccugGCGCc -3'
miRNA:   3'- uCCGGGCGCau----GGCGAGAAGGG---------CGCG- -5'
6356 3' -61.4 NC_001847.1 + 132879 0.73 0.275908
Target:  5'- cGGCuuccgCCGCGUGCCGCcCggggacuaccacacgCCCGCGCc -3'
miRNA:   3'- uCCG-----GGCGCAUGGCGaGaa-------------GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 132804 0.71 0.369926
Target:  5'- cGGCCCGUGcaaaACgGCgggUUCCGCGCa -3'
miRNA:   3'- uCCGGGCGCa---UGgCGagaAGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 132801 0.71 0.354476
Target:  5'- cGGGCCgGCGcggcgggaGCCGCcgCUgcccgCCCGCGUg -3'
miRNA:   3'- -UCCGGgCGCa-------UGGCGa-GAa----GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 132754 0.7 0.40218
Target:  5'- cGGCCgagCGCGUcACCGCcgUCUUCgCGgGCg -3'
miRNA:   3'- uCCGG---GCGCA-UGGCG--AGAAGgGCgCG- -5'
6356 3' -61.4 NC_001847.1 + 132553 0.77 0.168778
Target:  5'- cGGGCUCGCGUgcggccgcggcgGCCGCgcaggcgCCCGCGCc -3'
miRNA:   3'- -UCCGGGCGCA------------UGGCGagaa---GGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.