miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6356 5' -53.2 NC_001847.1 + 127953 0.66 0.944799
Target:  5'- -cGCUcGAGGAcGCGCuccaaaucCUGUACGCCa -3'
miRNA:   3'- gaCGGuCUUUUaCGCG--------GACAUGCGGc -5'
6356 5' -53.2 NC_001847.1 + 125430 0.66 0.95748
Target:  5'- -cGCCGGAGGAcccGCGCgUGgcugGCCGg -3'
miRNA:   3'- gaCGGUCUUUUa--CGCGgACaug-CGGC- -5'
6356 5' -53.2 NC_001847.1 + 109163 0.66 0.960859
Target:  5'- -aGCCAGAGccggccgcGCGCUUGUucccaagGCGUCGg -3'
miRNA:   3'- gaCGGUCUUuua-----CGCGGACA-------UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 8601 0.66 0.961222
Target:  5'- -cGCCAGggGcgGCGCUcg---GCCGg -3'
miRNA:   3'- gaCGGUCuuUuaCGCGGacaugCGGC- -5'
6356 5' -53.2 NC_001847.1 + 115134 0.66 0.961222
Target:  5'- -cGCCcuauuGGAAGUGCGCugcuCUGgcgggGCGCCu -3'
miRNA:   3'- gaCGGu----CUUUUACGCG----GACa----UGCGGc -5'
6356 5' -53.2 NC_001847.1 + 49583 0.66 0.961222
Target:  5'- -gGCCGacGGcgGCGCCUGgGCGCa- -3'
miRNA:   3'- gaCGGUcuUUuaCGCGGACaUGCGgc -5'
6356 5' -53.2 NC_001847.1 + 49948 0.66 0.961222
Target:  5'- -cGCCGGGcugcccgGCGCCgaGUACGCg- -3'
miRNA:   3'- gaCGGUCUuuua---CGCGGa-CAUGCGgc -5'
6356 5' -53.2 NC_001847.1 + 127025 0.66 0.961222
Target:  5'- -cGCCccuGggGccccGCGCCUGcgcugGCGCCGc -3'
miRNA:   3'- gaCGGu--CuuUua--CGCGGACa----UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 133131 0.66 0.961222
Target:  5'- gUGCUGGAAAAccUGCGgCUGaagcuaGCGCCu -3'
miRNA:   3'- gACGGUCUUUU--ACGCgGACa-----UGCGGc -5'
6356 5' -53.2 NC_001847.1 + 98775 0.66 0.95748
Target:  5'- gCUGcCCGGGccgcGGcgGCGCCgcgugGcGCGCCGc -3'
miRNA:   3'- -GAC-GGUCU----UUuaCGCGGa----CaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 89347 0.66 0.95748
Target:  5'- -cGCCGGGcuuUGCGCgCuucggagcugUGUugGCCGa -3'
miRNA:   3'- gaCGGUCUuuuACGCG-G----------ACAugCGGC- -5'
6356 5' -53.2 NC_001847.1 + 84767 0.66 0.956311
Target:  5'- -aGCCGGcgGcgGCGCC-GUccuuagcgucggccGCGCCGc -3'
miRNA:   3'- gaCGGUCuuUuaCGCGGaCA--------------UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 21756 0.66 0.944799
Target:  5'- -cGCgCGGggGGgccgccgGCGCCgGgcccgGCGCCGg -3'
miRNA:   3'- gaCG-GUCuuUUa------CGCGGaCa----UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 67195 0.66 0.944799
Target:  5'- cCUGCCGcGGcuGUGUGCCgucGUgcugcgcggACGCCGu -3'
miRNA:   3'- -GACGGU-CUuuUACGCGGa--CA---------UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 82732 0.66 0.944799
Target:  5'- -cGCgCGGGcccaGCGCCUGgagcacgGCGCCGu -3'
miRNA:   3'- gaCG-GUCUuuuaCGCGGACa------UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 74044 0.66 0.949273
Target:  5'- cCUGCUGuGGAAcgGCaaCgUGUACGCCGa -3'
miRNA:   3'- -GACGGU-CUUUuaCGc-GgACAUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 124261 0.66 0.953498
Target:  5'- gCUGCCGcAGGcgGUcuGCCUGgGCGCCc -3'
miRNA:   3'- -GACGGUcUUUuaCG--CGGACaUGCGGc -5'
6356 5' -53.2 NC_001847.1 + 104125 0.66 0.953498
Target:  5'- uUGCCGGcgcgcgcGCGCCggcaACGCCGg -3'
miRNA:   3'- gACGGUCuuuua--CGCGGaca-UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 105662 0.66 0.953498
Target:  5'- -gGCCGGAGAgcGUGcCGCCUcGgcCGCgGg -3'
miRNA:   3'- gaCGGUCUUU--UAC-GCGGA-CauGCGgC- -5'
6356 5' -53.2 NC_001847.1 + 66088 0.66 0.953498
Target:  5'- -cGUUAGAAAGUccacGuCGCCcccGUACGCCGa -3'
miRNA:   3'- gaCGGUCUUUUA----C-GCGGa--CAUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.