miRNA display CGI


Results 41 - 60 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6356 5' -53.2 NC_001847.1 + 96629 0.67 0.924379
Target:  5'- -gGCCAGAGcacaGCGCCggcgaccGCGCCGc -3'
miRNA:   3'- gaCGGUCUUuua-CGCGGaca----UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 49987 0.67 0.940075
Target:  5'- -aGCCAcGAGg--GCGCCgUGUugcCGCCGg -3'
miRNA:   3'- gaCGGU-CUUuuaCGCGG-ACAu--GCGGC- -5'
6356 5' -53.2 NC_001847.1 + 57025 0.67 0.935098
Target:  5'- cCUGCugCAGAacaagGAGcGCGcCCUGUGgGCCGa -3'
miRNA:   3'- -GACG--GUCU-----UUUaCGC-GGACAUgCGGC- -5'
6356 5' -53.2 NC_001847.1 + 106722 0.67 0.940075
Target:  5'- -aGCCAGcgcggGCGCCgGUugcGCGCCc -3'
miRNA:   3'- gaCGGUCuuuuaCGCGGaCA---UGCGGc -5'
6356 5' -53.2 NC_001847.1 + 66764 0.67 0.940075
Target:  5'- -cGCCGGGcacGAA-GCGCCgacGUuuuCGCCGg -3'
miRNA:   3'- gaCGGUCU---UUUaCGCGGa--CAu--GCGGC- -5'
6356 5' -53.2 NC_001847.1 + 104456 0.67 0.929866
Target:  5'- -cGCgCAGGuacacGUGCGCCUGcccgACgGCCGg -3'
miRNA:   3'- gaCG-GUCUuu---UACGCGGACa---UG-CGGC- -5'
6356 5' -53.2 NC_001847.1 + 3909 0.67 0.940075
Target:  5'- -aGCCAGcgcggGCGCCgGUugcGCGCCc -3'
miRNA:   3'- gaCGGUCuuuuaCGCGGaCA---UGCGGc -5'
6356 5' -53.2 NC_001847.1 + 43542 0.67 0.935098
Target:  5'- -cGCgAGGAGAaGCGCCgccgcGaGCGCCGc -3'
miRNA:   3'- gaCGgUCUUUUaCGCGGa----CaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 129780 0.67 0.935098
Target:  5'- -cGCCGGAGccUGgGCCcGgccGCGCCGc -3'
miRNA:   3'- gaCGGUCUUuuACgCGGaCa--UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 1359 0.67 0.935098
Target:  5'- -gGCCAuGuccuUGCGCCcGUcgaGCGCCGg -3'
miRNA:   3'- gaCGGU-CuuuuACGCGGaCA---UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 56815 0.67 0.929866
Target:  5'- -gGCCGGc----GCGCCUGgggGCGCgGg -3'
miRNA:   3'- gaCGGUCuuuuaCGCGGACa--UGCGgC- -5'
6356 5' -53.2 NC_001847.1 + 74335 0.67 0.929866
Target:  5'- -cGCCAuc-AGUGUGUCUGgcggGCGCCa -3'
miRNA:   3'- gaCGGUcuuUUACGCGGACa---UGCGGc -5'
6356 5' -53.2 NC_001847.1 + 41092 0.67 0.929866
Target:  5'- gUGCCGGcccagcUGCGCCUGcACGUgGu -3'
miRNA:   3'- gACGGUCuuuu--ACGCGGACaUGCGgC- -5'
6356 5' -53.2 NC_001847.1 + 57588 0.67 0.924379
Target:  5'- -gGCCGcGGAAA-GCGCaCgaggGUGCGCCa -3'
miRNA:   3'- gaCGGU-CUUUUaCGCG-Ga---CAUGCGGc -5'
6356 5' -53.2 NC_001847.1 + 57237 0.67 0.918636
Target:  5'- -cGCCGaGAGGUGCGCCac--CGCCGc -3'
miRNA:   3'- gaCGGUcUUUUACGCGGacauGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 53719 0.67 0.924379
Target:  5'- -gGCCGGcggcugGCG-CUGUGCGCCu -3'
miRNA:   3'- gaCGGUCuuuua-CGCgGACAUGCGGc -5'
6356 5' -53.2 NC_001847.1 + 106066 0.67 0.924379
Target:  5'- -cGCCGGcggcAGggGCGCCg--GCGCCGc -3'
miRNA:   3'- gaCGGUCu---UUuaCGCGGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 18682 0.67 0.924379
Target:  5'- gCUGagCAGAAcc-GCGCCgcgcGUGCGCCa -3'
miRNA:   3'- -GACg-GUCUUuuaCGCGGa---CAUGCGGc -5'
6356 5' -53.2 NC_001847.1 + 124522 0.67 0.929866
Target:  5'- -aGCCGGAGGAccaGCGCCagcagggcgcgGgccgGCGCCGg -3'
miRNA:   3'- gaCGGUCUUUUa--CGCGGa----------Ca---UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 36808 0.67 0.929866
Target:  5'- uUGCCGcuucGUGCGCCaccgGcGCGCCGa -3'
miRNA:   3'- gACGGUcuuuUACGCGGa---CaUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.