miRNA display CGI


Results 61 - 80 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6356 5' -53.2 NC_001847.1 + 1359 0.67 0.935098
Target:  5'- -gGCCAuGuccuUGCGCCcGUcgaGCGCCGg -3'
miRNA:   3'- gaCGGU-CuuuuACGCGGaCA---UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 129780 0.67 0.935098
Target:  5'- -cGCCGGAGccUGgGCCcGgccGCGCCGc -3'
miRNA:   3'- gaCGGUCUUuuACgCGGaCa--UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 43542 0.67 0.935098
Target:  5'- -cGCgAGGAGAaGCGCCgccgcGaGCGCCGc -3'
miRNA:   3'- gaCGgUCUUUUaCGCGGa----CaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 3909 0.67 0.940075
Target:  5'- -aGCCAGcgcggGCGCCgGUugcGCGCCc -3'
miRNA:   3'- gaCGGUCuuuuaCGCGGaCA---UGCGGc -5'
6356 5' -53.2 NC_001847.1 + 3253 0.67 0.924379
Target:  5'- -cGCCGGcggcAGggGCGCCg--GCGCCGc -3'
miRNA:   3'- gaCGGUCu---UUuaCGCGGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 57237 0.67 0.918636
Target:  5'- -cGCCGaGAGGUGCGCCac--CGCCGc -3'
miRNA:   3'- gaCGGUcUUUUACGCGGacauGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 104456 0.67 0.929866
Target:  5'- -cGCgCAGGuacacGUGCGCCUGcccgACgGCCGg -3'
miRNA:   3'- gaCG-GUCUuu---UACGCGGACa---UG-CGGC- -5'
6356 5' -53.2 NC_001847.1 + 31767 0.68 0.878911
Target:  5'- -cGCCGGAGAcgcgGCGCUggcGUcCGCCGc -3'
miRNA:   3'- gaCGGUCUUUua--CGCGGa--CAuGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 89816 0.68 0.885432
Target:  5'- cCUGCCAagcgcuuuauuccGGAAAcgcGCGCCUGcgacCGCCGg -3'
miRNA:   3'- -GACGGU-------------CUUUUa--CGCGGACau--GCGGC- -5'
6356 5' -53.2 NC_001847.1 + 30720 0.68 0.886144
Target:  5'- gCUGCCGcGGcgcAGUGCGCCgc-GCGCUGg -3'
miRNA:   3'- -GACGGU-CUu--UUACGCGGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 51866 0.68 0.886144
Target:  5'- -gGCCgcAGGu-GUGCGCCUcUGCGCCc -3'
miRNA:   3'- gaCGG--UCUuuUACGCGGAcAUGCGGc -5'
6356 5' -53.2 NC_001847.1 + 52713 0.68 0.893824
Target:  5'- uUGCCGGGAAGaccaaggggaggagcGCGCaccgGUGCGCCa -3'
miRNA:   3'- gACGGUCUUUUa--------------CGCGga--CAUGCGGc -5'
6356 5' -53.2 NC_001847.1 + 106974 0.68 0.899223
Target:  5'- -cGCCAGGuaacccAAcgGCGCCucggcgaucaugcUGUugGCCa -3'
miRNA:   3'- gaCGGUCU------UUuaCGCGG-------------ACAugCGGc -5'
6356 5' -53.2 NC_001847.1 + 51480 0.68 0.899223
Target:  5'- -cGCCAGGug--GCGCCaGUcaaacucggagcaGCGCCGc -3'
miRNA:   3'- gaCGGUCUuuuaCGCGGaCA-------------UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 102043 0.68 0.899887
Target:  5'- -gGCCAGGAug-GCGCgagcgCUGUacugcGCGCCGc -3'
miRNA:   3'- gaCGGUCUUuuaCGCG-----GACA-----UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 84703 0.68 0.899887
Target:  5'- -gGCCguAGAAGGcGCuGCCUuUGCGCCGg -3'
miRNA:   3'- gaCGG--UCUUUUaCG-CGGAcAUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 117405 0.68 0.906388
Target:  5'- -cGCgAGGccGUGgcCGCCUcGUACGCCGa -3'
miRNA:   3'- gaCGgUCUuuUAC--GCGGA-CAUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 38500 0.68 0.899887
Target:  5'- -cGCCGGggGGcgGCGCg-GU-CGCCGg -3'
miRNA:   3'- gaCGGUCuuUUa-CGCGgaCAuGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 53801 0.68 0.906388
Target:  5'- -cGCgAGGAGGucUGCGCCcccugGcGCGCCGg -3'
miRNA:   3'- gaCGgUCUUUU--ACGCGGa----CaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 96771 0.68 0.912639
Target:  5'- gUGCCAGugccgGUGCCg--GCGCUGg -3'
miRNA:   3'- gACGGUCuuuuaCGCGGacaUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.