miRNA display CGI


Results 61 - 80 of 158 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6356 5' -53.2 NC_001847.1 + 94031 0.69 0.863745
Target:  5'- cCUGCCGGGAucgaC-CCUaGUGCGCCGg -3'
miRNA:   3'- -GACGGUCUUuuacGcGGA-CAUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 93845 0.69 0.863745
Target:  5'- -cGCCGGAAAcgucGCGCac-UACGCCGg -3'
miRNA:   3'- gaCGGUCUUUua--CGCGgacAUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 71223 0.69 0.871443
Target:  5'- -cGCUGGGugaugGAGUGUGCCaUG-ACGCCGg -3'
miRNA:   3'- gaCGGUCU-----UUUACGCGG-ACaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 41720 0.69 0.871443
Target:  5'- -gGCCAGGGcGUguacaGCGCC-GUGCGCUGc -3'
miRNA:   3'- gaCGGUCUUuUA-----CGCGGaCAUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 36324 0.69 0.871443
Target:  5'- -cGCCGcGAGGGUGCGuCCUGc-CGCCc -3'
miRNA:   3'- gaCGGU-CUUUUACGC-GGACauGCGGc -5'
6356 5' -53.2 NC_001847.1 + 134580 0.68 0.878911
Target:  5'- -cGCCGGAGAcgcgGCGCUggcGUcCGCCGc -3'
miRNA:   3'- gaCGGUCUUUua--CGCGGa--CAuGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 31767 0.68 0.878911
Target:  5'- -cGCCGGAGAcgcgGCGCUggcGUcCGCCGc -3'
miRNA:   3'- gaCGGUCUUUua--CGCGGa--CAuGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 77327 0.68 0.878911
Target:  5'- gCUGCggaggCGGGAAAUGUaCCgGUACGCCa -3'
miRNA:   3'- -GACG-----GUCUUUUACGcGGaCAUGCGGc -5'
6356 5' -53.2 NC_001847.1 + 89816 0.68 0.885432
Target:  5'- cCUGCCAagcgcuuuauuccGGAAAcgcGCGCCUGcgacCGCCGg -3'
miRNA:   3'- -GACGGU-------------CUUUUa--CGCGGACau--GCGGC- -5'
6356 5' -53.2 NC_001847.1 + 133533 0.68 0.886144
Target:  5'- gCUGCCGcGGcgcAGUGCGCCgc-GCGCUGg -3'
miRNA:   3'- -GACGGU-CUu--UUACGCGGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 80245 0.68 0.886144
Target:  5'- gCUcCCGGGAAacGUGCGCCU---CGCCGg -3'
miRNA:   3'- -GAcGGUCUUU--UACGCGGAcauGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 30720 0.68 0.886144
Target:  5'- gCUGCCGcGGcgcAGUGCGCCgc-GCGCUGg -3'
miRNA:   3'- -GACGGU-CUu--UUACGCGGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 51866 0.68 0.886144
Target:  5'- -gGCCgcAGGu-GUGCGCCUcUGCGCCc -3'
miRNA:   3'- gaCGG--UCUuuUACGCGGAcAUGCGGc -5'
6356 5' -53.2 NC_001847.1 + 33953 0.68 0.893138
Target:  5'- -cGCUGGAGAAcccgaGCGCgCUG-GCGCCGg -3'
miRNA:   3'- gaCGGUCUUUUa----CGCG-GACaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 18889 0.68 0.893138
Target:  5'- -cGCCAGAGuccgcaGCGCCgcGUAcCGCCa -3'
miRNA:   3'- gaCGGUCUUuua---CGCGGa-CAU-GCGGc -5'
6356 5' -53.2 NC_001847.1 + 52713 0.68 0.893824
Target:  5'- uUGCCGGGAAGaccaaggggaggagcGCGCaccgGUGCGCCa -3'
miRNA:   3'- gACGGUCUUUUa--------------CGCGga--CAUGCGGc -5'
6356 5' -53.2 NC_001847.1 + 106974 0.68 0.899223
Target:  5'- -cGCCAGGuaacccAAcgGCGCCucggcgaucaugcUGUugGCCa -3'
miRNA:   3'- gaCGGUCU------UUuaCGCGG-------------ACAugCGGc -5'
6356 5' -53.2 NC_001847.1 + 51480 0.68 0.899223
Target:  5'- -cGCCAGGug--GCGCCaGUcaaacucggagcaGCGCCGc -3'
miRNA:   3'- gaCGGUCUuuuaCGCGGaCA-------------UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 102043 0.68 0.899887
Target:  5'- -gGCCAGGAug-GCGCgagcgCUGUacugcGCGCCGc -3'
miRNA:   3'- gaCGGUCUUuuaCGCG-----GACA-----UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 38500 0.68 0.899887
Target:  5'- -cGCCGGggGGcgGCGCg-GU-CGCCGg -3'
miRNA:   3'- gaCGGUCuuUUa-CGCGgaCAuGCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.