miRNA display CGI


Results 61 - 80 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6356 5' -53.2 NC_001847.1 + 106722 0.67 0.940075
Target:  5'- -aGCCAGcgcggGCGCCgGUugcGCGCCc -3'
miRNA:   3'- gaCGGUCuuuuaCGCGGaCA---UGCGGc -5'
6356 5' -53.2 NC_001847.1 + 59312 0.75 0.548039
Target:  5'- gUGCCAGGGcGcgGCGCCggcgGCGCCGu -3'
miRNA:   3'- gACGGUCUU-UuaCGCGGaca-UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 132376 0.73 0.642546
Target:  5'- -cGCCGGcgGggGCGCCg--GCGCCGg -3'
miRNA:   3'- gaCGGUCuuUuaCGCGGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 28980 0.73 0.67419
Target:  5'- -cGCCGGGAAcGUGCGCCaUGcuagagcGCGCCGu -3'
miRNA:   3'- gaCGGUCUUU-UACGCGG-ACa------UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 96571 0.72 0.695118
Target:  5'- uCUGCUGGcc-GUGUGCCUGgGCGCCc -3'
miRNA:   3'- -GACGGUCuuuUACGCGGACaUGCGGc -5'
6356 5' -53.2 NC_001847.1 + 110883 0.71 0.765086
Target:  5'- -cGCCAGcgGggGgGCCUGUccaccacggcgagGCGCCGa -3'
miRNA:   3'- gaCGGUCuuUuaCgCGGACA-------------UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 133167 0.71 0.775771
Target:  5'- gCUGCCcGggGAgGCGCUggcgGCGCCGc -3'
miRNA:   3'- -GACGGuCuuUUaCGCGGaca-UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 29899 0.7 0.813131
Target:  5'- cCUGCCGcccGAAGUGCGCCcgccUGUGC-CCGc -3'
miRNA:   3'- -GACGGUc--UUUUACGCGG----ACAUGcGGC- -5'
6356 5' -53.2 NC_001847.1 + 100848 0.66 0.95748
Target:  5'- -gGCCAGGGccGGaGCGCCggccCGCCGg -3'
miRNA:   3'- gaCGGUCUU--UUaCGCGGacauGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 63541 0.66 0.95748
Target:  5'- gCUGCUGGcgc---CGCCUGggccgGCGCCGg -3'
miRNA:   3'- -GACGGUCuuuuacGCGGACa----UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 7857 0.66 0.953498
Target:  5'- -cGCCGGug---GCGCCUGcagagGCgGCCGc -3'
miRNA:   3'- gaCGGUCuuuuaCGCGGACa----UG-CGGC- -5'
6356 5' -53.2 NC_001847.1 + 23051 0.68 0.912639
Target:  5'- -aGCCAGuccaccuUGCGCCggacCGCCGg -3'
miRNA:   3'- gaCGGUCuuuu---ACGCGGacauGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 96629 0.67 0.924379
Target:  5'- -gGCCAGAGcacaGCGCCggcgaccGCGCCGc -3'
miRNA:   3'- gaCGGUCUUuua-CGCGGaca----UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 104456 0.67 0.929866
Target:  5'- -cGCgCAGGuacacGUGCGCCUGcccgACgGCCGg -3'
miRNA:   3'- gaCG-GUCUuu---UACGCGGACa---UG-CGGC- -5'
6356 5' -53.2 NC_001847.1 + 49987 0.67 0.940075
Target:  5'- -aGCCAcGAGg--GCGCCgUGUugcCGCCGg -3'
miRNA:   3'- gaCGGU-CUUuuaCGCGG-ACAu--GCGGC- -5'
6356 5' -53.2 NC_001847.1 + 75487 0.66 0.944799
Target:  5'- -gGCCGucGAGGcgGCGCCgGUGCacgGCCa -3'
miRNA:   3'- gaCGGU--CUUUuaCGCGGaCAUG---CGGc -5'
6356 5' -53.2 NC_001847.1 + 99722 0.69 0.847688
Target:  5'- gUGCuCAGcAucUGCGCCUcGUAgGCCGa -3'
miRNA:   3'- gACG-GUCuUuuACGCGGA-CAUgCGGC- -5'
6356 5' -53.2 NC_001847.1 + 59608 0.7 0.804031
Target:  5'- -cGCCgAGAucgcgcGGUGCGCC-GUGCGCUGc -3'
miRNA:   3'- gaCGG-UCUu-----UUACGCGGaCAUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 122882 0.7 0.822055
Target:  5'- -cGCuCGGguGGUGCGUCUGUGuccauagcauCGCCGg -3'
miRNA:   3'- gaCG-GUCuuUUACGCGGACAU----------GCGGC- -5'
6356 5' -53.2 NC_001847.1 + 41092 0.67 0.929866
Target:  5'- gUGCCGGcccagcUGCGCCUGcACGUgGu -3'
miRNA:   3'- gACGGUCuuuu--ACGCGGACaUGCGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.