miRNA display CGI


Results 41 - 60 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6356 5' -53.2 NC_001847.1 + 75401 0.69 0.862963
Target:  5'- -gGCCAGcGAGUcgagcucGCGCCgg-ACGCCGa -3'
miRNA:   3'- gaCGGUCuUUUA-------CGCGGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 19074 0.72 0.715821
Target:  5'- -cGCCGugcGAAAGUGCGCCccgGUGC-CCGa -3'
miRNA:   3'- gaCGGU---CUUUUACGCGGa--CAUGcGGC- -5'
6356 5' -53.2 NC_001847.1 + 39835 0.78 0.411959
Target:  5'- cCUGCCGGcgcc-GCGCCUGgagGCGCCa -3'
miRNA:   3'- -GACGGUCuuuuaCGCGGACa--UGCGGc -5'
6356 5' -53.2 NC_001847.1 + 70224 0.69 0.847688
Target:  5'- gCUGCUGGAGAagGCGCCgccgAUGUCGc -3'
miRNA:   3'- -GACGGUCUUUuaCGCGGaca-UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 82597 0.78 0.411959
Target:  5'- -cGCUcGcgGcgGCGCCUGUGCGCCGc -3'
miRNA:   3'- gaCGGuCuuUuaCGCGGACAUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 49987 0.67 0.940075
Target:  5'- -aGCCAcGAGg--GCGCCgUGUugcCGCCGg -3'
miRNA:   3'- gaCGGU-CUUuuaCGCGG-ACAu--GCGGC- -5'
6356 5' -53.2 NC_001847.1 + 82100 0.76 0.507306
Target:  5'- -cGCCGGAGg--GCGCCUGcguuUGCGCCu -3'
miRNA:   3'- gaCGGUCUUuuaCGCGGAC----AUGCGGc -5'
6356 5' -53.2 NC_001847.1 + 104456 0.67 0.929866
Target:  5'- -cGCgCAGGuacacGUGCGCCUGcccgACgGCCGg -3'
miRNA:   3'- gaCG-GUCUuu---UACGCGGACa---UG-CGGC- -5'
6356 5' -53.2 NC_001847.1 + 18682 0.67 0.924379
Target:  5'- gCUGagCAGAAcc-GCGCCgcgcGUGCGCCa -3'
miRNA:   3'- -GACg-GUCUUuuaCGCGGa---CAUGCGGc -5'
6356 5' -53.2 NC_001847.1 + 99509 0.68 0.912639
Target:  5'- -aGCCuGGAGuuUGCGCCgagccccGCGCCGc -3'
miRNA:   3'- gaCGG-UCUUuuACGCGGaca----UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 19270 0.68 0.906388
Target:  5'- -aGCCGGcggcgcaGCGUCUGUGCGgCGg -3'
miRNA:   3'- gaCGGUCuuuua--CGCGGACAUGCgGC- -5'
6356 5' -53.2 NC_001847.1 + 18889 0.68 0.893138
Target:  5'- -cGCCAGAGuccgcaGCGCCgcGUAcCGCCa -3'
miRNA:   3'- gaCGGUCUUuua---CGCGGa-CAU-GCGGc -5'
6356 5' -53.2 NC_001847.1 + 134580 0.68 0.878911
Target:  5'- -cGCCGGAGAcgcgGCGCUggcGUcCGCCGc -3'
miRNA:   3'- gaCGGUCUUUua--CGCGGa--CAuGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 43779 0.7 0.822055
Target:  5'- cCUGCCGGugcuGGAcgcgcGCGCCgGcGCGCCGg -3'
miRNA:   3'- -GACGGUCu---UUUa----CGCGGaCaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 34527 0.7 0.804031
Target:  5'- -cGCCGGc-GAUGCGCCgcc-CGCCGg -3'
miRNA:   3'- gaCGGUCuuUUACGCGGacauGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 96288 0.71 0.775771
Target:  5'- aCUGCgagCAGguGGUGUGUgaGUGCGCCGc -3'
miRNA:   3'- -GACG---GUCuuUUACGCGgaCAUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 39249 0.71 0.756229
Target:  5'- -cGUCAGGcgGUGCGCUUGgcuCGCCc -3'
miRNA:   3'- gaCGGUCUuuUACGCGGACau-GCGGc -5'
6356 5' -53.2 NC_001847.1 + 35320 0.72 0.684677
Target:  5'- -cGCUGGAAGcgggcGUGCGCCUGgagcUGCCGa -3'
miRNA:   3'- gaCGGUCUUU-----UACGCGGACau--GCGGC- -5'
6356 5' -53.2 NC_001847.1 + 111253 0.73 0.67419
Target:  5'- -gGUCGGAGGcgGCGCCggGUcggaggcgGCGCCGg -3'
miRNA:   3'- gaCGGUCUUUuaCGCGGa-CA--------UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 43005 0.73 0.642546
Target:  5'- -cGCCGGggGGgcGCGCCgGgcCGCCGa -3'
miRNA:   3'- gaCGGUCuuUUa-CGCGGaCauGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.