miRNA display CGI


Results 41 - 60 of 158 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6356 5' -53.2 NC_001847.1 + 88209 0.71 0.775771
Target:  5'- gCUGCCGGAcacccAAAaGCGCCU---CGCCGg -3'
miRNA:   3'- -GACGGUCU-----UUUaCGCGGAcauGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 13872 0.71 0.785342
Target:  5'- -gGCgAGggGggGCGCCU-UugGCCGg -3'
miRNA:   3'- gaCGgUCuuUuaCGCGGAcAugCGGC- -5'
6356 5' -53.2 NC_001847.1 + 99627 0.71 0.785342
Target:  5'- -cGCC-GAGGAUGCGCUcGgcgcGCGCCGu -3'
miRNA:   3'- gaCGGuCUUUUACGCGGaCa---UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 58679 0.71 0.785342
Target:  5'- gCUGCCGuGGAAGcGCGUCUGUGcCGCgGc -3'
miRNA:   3'- -GACGGU-CUUUUaCGCGGACAU-GCGgC- -5'
6356 5' -53.2 NC_001847.1 + 59608 0.7 0.804031
Target:  5'- -cGCCgAGAucgcgcGGUGCGCC-GUGCGCUGc -3'
miRNA:   3'- gaCGG-UCUu-----UUACGCGGaCAUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 61486 0.7 0.804031
Target:  5'- -gGCCAGg----GCGUCcagGUACGCCGg -3'
miRNA:   3'- gaCGGUCuuuuaCGCGGa--CAUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 34527 0.7 0.804031
Target:  5'- -cGCCGGc-GAUGCGCCgcc-CGCCGg -3'
miRNA:   3'- gaCGGUCuuUUACGCGGacauGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 29899 0.7 0.813131
Target:  5'- cCUGCCGcccGAAGUGCGCCcgccUGUGC-CCGc -3'
miRNA:   3'- -GACGGUc--UUUUACGCGG----ACAUGcGGC- -5'
6356 5' -53.2 NC_001847.1 + 39338 0.7 0.821171
Target:  5'- -aGCCGGGuccaagcaccaguAGAUGCGCCc--GCGCCGc -3'
miRNA:   3'- gaCGGUCU-------------UUUACGCGGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 122882 0.7 0.822055
Target:  5'- -cGCuCGGguGGUGCGUCUGUGuccauagcauCGCCGg -3'
miRNA:   3'- gaCG-GUCuuUUACGCGGACAU----------GCGGC- -5'
6356 5' -53.2 NC_001847.1 + 43779 0.7 0.822055
Target:  5'- cCUGCCGGugcuGGAcgcgcGCGCCgGcGCGCCGg -3'
miRNA:   3'- -GACGGUCu---UUUa----CGCGGaCaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 12835 0.7 0.830795
Target:  5'- -cGCuUGGGAGAUG-GCCgGUACGCCGc -3'
miRNA:   3'- gaCG-GUCUUUUACgCGGaCAUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 59498 0.69 0.839342
Target:  5'- -cGgCAGggGGUGCGCCg--AgGCCGc -3'
miRNA:   3'- gaCgGUCuuUUACGCGGacaUgCGGC- -5'
6356 5' -53.2 NC_001847.1 + 14338 0.69 0.839342
Target:  5'- -gGCCGGGcgugguGGcgGCGCCUGcggggaACGCCGc -3'
miRNA:   3'- gaCGGUCU------UUuaCGCGGACa-----UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 99722 0.69 0.847688
Target:  5'- gUGCuCAGcAucUGCGCCUcGUAgGCCGa -3'
miRNA:   3'- gACG-GUCuUuuACGCGGA-CAUgCGGC- -5'
6356 5' -53.2 NC_001847.1 + 70224 0.69 0.847688
Target:  5'- gCUGCUGGAGAagGCGCCgccgAUGUCGc -3'
miRNA:   3'- -GACGGUCUUUuaCGCGGaca-UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 100891 0.69 0.855825
Target:  5'- -cGCCGGuc--UGCGCCUc-GCGCCGc -3'
miRNA:   3'- gaCGGUCuuuuACGCGGAcaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 61853 0.69 0.855825
Target:  5'- -cGCCGGcguAGGccGCGCCUGccgGCGCCc -3'
miRNA:   3'- gaCGGUC---UUUuaCGCGGACa--UGCGGc -5'
6356 5' -53.2 NC_001847.1 + 131526 0.69 0.862963
Target:  5'- -cGCCAGGAGcgGCGCauguuugGUcuuugccgcaacgACGCCGa -3'
miRNA:   3'- gaCGGUCUUUuaCGCGga-----CA-------------UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 75401 0.69 0.862963
Target:  5'- -gGCCAGcGAGUcgagcucGCGCCgg-ACGCCGa -3'
miRNA:   3'- gaCGGUCuUUUA-------CGCGGacaUGCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.