miRNA display CGI


Results 41 - 60 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6356 5' -53.2 NC_001847.1 + 31184 0.76 0.477619
Target:  5'- gCUGCCGGAGccgcGCGCCgagGCGCCGc -3'
miRNA:   3'- -GACGGUCUUuua-CGCGGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 31767 0.68 0.878911
Target:  5'- -cGCCGGAGAcgcgGCGCUggcGUcCGCCGc -3'
miRNA:   3'- gaCGGUCUUUua--CGCGGa--CAuGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 32427 0.72 0.726063
Target:  5'- -aGCCGGggGGUGCggGCCUuu-CGCCGc -3'
miRNA:   3'- gaCGGUCuuUUACG--CGGAcauGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 32903 0.68 0.911409
Target:  5'- -cGCCGcgcgcgaGCGCCUGgACGCCGu -3'
miRNA:   3'- gaCGGUcuuuua-CGCGGACaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 33953 0.68 0.893138
Target:  5'- -cGCUGGAGAAcccgaGCGCgCUG-GCGCCGg -3'
miRNA:   3'- gaCGGUCUUUUa----CGCG-GACaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 34527 0.7 0.804031
Target:  5'- -cGCCGGc-GAUGCGCCgcc-CGCCGg -3'
miRNA:   3'- gaCGGUCuuUUACGCGGacauGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 34620 0.79 0.344161
Target:  5'- -cGCCgAGGAAGUccgGCGCCUGcGCGCCGa -3'
miRNA:   3'- gaCGG-UCUUUUA---CGCGGACaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 35320 0.72 0.684677
Target:  5'- -cGCUGGAAGcgggcGUGCGCCUGgagcUGCCGa -3'
miRNA:   3'- gaCGGUCUUU-----UACGCGGACau--GCGGC- -5'
6356 5' -53.2 NC_001847.1 + 36324 0.69 0.871443
Target:  5'- -cGCCGcGAGGGUGCGuCCUGc-CGCCc -3'
miRNA:   3'- gaCGGU-CUUUUACGC-GGACauGCGGc -5'
6356 5' -53.2 NC_001847.1 + 36808 0.67 0.929866
Target:  5'- uUGCCGcuucGUGCGCCaccgGcGCGCCGa -3'
miRNA:   3'- gACGGUcuuuUACGCGGa---CaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 38500 0.68 0.899887
Target:  5'- -cGCCGGggGGcgGCGCg-GU-CGCCGg -3'
miRNA:   3'- gaCGGUCuuUUa-CGCGgaCAuGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 38712 0.71 0.766064
Target:  5'- gUGCCuccGggGccGCGCCUGc-CGCCGg -3'
miRNA:   3'- gACGGu--CuuUuaCGCGGACauGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 39249 0.71 0.756229
Target:  5'- -cGUCAGGcgGUGCGCUUGgcuCGCCc -3'
miRNA:   3'- gaCGGUCUuuUACGCGGACau-GCGGc -5'
6356 5' -53.2 NC_001847.1 + 39338 0.7 0.821171
Target:  5'- -aGCCGGGuccaagcaccaguAGAUGCGCCc--GCGCCGc -3'
miRNA:   3'- gaCGGUCU-------------UUUACGCGGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 39835 0.78 0.411959
Target:  5'- cCUGCCGGcgcc-GCGCCUGgagGCGCCa -3'
miRNA:   3'- -GACGGUCuuuuaCGCGGACa--UGCGGc -5'
6356 5' -53.2 NC_001847.1 + 41092 0.67 0.929866
Target:  5'- gUGCCGGcccagcUGCGCCUGcACGUgGu -3'
miRNA:   3'- gACGGUCuuuu--ACGCGGACaUGCGgC- -5'
6356 5' -53.2 NC_001847.1 + 41720 0.69 0.871443
Target:  5'- -gGCCAGGGcGUguacaGCGCC-GUGCGCUGc -3'
miRNA:   3'- gaCGGUCUUuUA-----CGCGGaCAUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 43005 0.73 0.642546
Target:  5'- -cGCCGGggGGgcGCGCCgGgcCGCCGa -3'
miRNA:   3'- gaCGGUCuuUUa-CGCGGaCauGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 43542 0.67 0.935098
Target:  5'- -cGCgAGGAGAaGCGCCgccgcGaGCGCCGc -3'
miRNA:   3'- gaCGgUCUUUUaCGCGGa----CaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 43779 0.7 0.822055
Target:  5'- cCUGCCGGugcuGGAcgcgcGCGCCgGcGCGCCGg -3'
miRNA:   3'- -GACGGUCu---UUUa----CGCGGaCaUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.