miRNA display CGI


Results 61 - 80 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6356 5' -53.2 NC_001847.1 + 45360 0.73 0.663666
Target:  5'- -cGCCAGcgcGAUGacgGCCUcGUACGCCGg -3'
miRNA:   3'- gaCGGUCuu-UUACg--CGGA-CAUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 45673 0.71 0.756229
Target:  5'- -gGUCAGAugcgcGAUGCGCUUGUugGCg- -3'
miRNA:   3'- gaCGGUCUu----UUACGCGGACAugCGgc -5'
6356 5' -53.2 NC_001847.1 + 46637 0.72 0.684677
Target:  5'- -aGCaCAGGuuGUGCGCCUGaaugAUGCUGg -3'
miRNA:   3'- gaCG-GUCUuuUACGCGGACa---UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 49583 0.66 0.961222
Target:  5'- -gGCCGacGGcgGCGCCUGgGCGCa- -3'
miRNA:   3'- gaCGGUcuUUuaCGCGGACaUGCGgc -5'
6356 5' -53.2 NC_001847.1 + 49948 0.66 0.961222
Target:  5'- -cGCCGGGcugcccgGCGCCgaGUACGCg- -3'
miRNA:   3'- gaCGGUCUuuua---CGCGGa-CAUGCGgc -5'
6356 5' -53.2 NC_001847.1 + 49987 0.67 0.940075
Target:  5'- -aGCCAcGAGg--GCGCCgUGUugcCGCCGg -3'
miRNA:   3'- gaCGGU-CUUuuaCGCGG-ACAu--GCGGC- -5'
6356 5' -53.2 NC_001847.1 + 51480 0.68 0.899223
Target:  5'- -cGCCAGGug--GCGCCaGUcaaacucggagcaGCGCCGc -3'
miRNA:   3'- gaCGGUCUuuuaCGCGGaCA-------------UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 51866 0.68 0.886144
Target:  5'- -gGCCgcAGGu-GUGCGCCUcUGCGCCc -3'
miRNA:   3'- gaCGG--UCUuuUACGCGGAcAUGCGGc -5'
6356 5' -53.2 NC_001847.1 + 52690 0.66 0.95748
Target:  5'- -gGCCGGGcccgccGCGCCUGgagccaaGCGCCc -3'
miRNA:   3'- gaCGGUCUuuua--CGCGGACa------UGCGGc -5'
6356 5' -53.2 NC_001847.1 + 52713 0.68 0.893824
Target:  5'- uUGCCGGGAAGaccaaggggaggagcGCGCaccgGUGCGCCa -3'
miRNA:   3'- gACGGUCUUUUa--------------CGCGga--CAUGCGGc -5'
6356 5' -53.2 NC_001847.1 + 53719 0.67 0.924379
Target:  5'- -gGCCGGcggcugGCG-CUGUGCGCCu -3'
miRNA:   3'- gaCGGUCuuuua-CGCgGACAUGCGGc -5'
6356 5' -53.2 NC_001847.1 + 53801 0.68 0.906388
Target:  5'- -cGCgAGGAGGucUGCGCCcccugGcGCGCCGg -3'
miRNA:   3'- gaCGgUCUUUU--ACGCGGa----CaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 56815 0.67 0.929866
Target:  5'- -gGCCGGc----GCGCCUGgggGCGCgGg -3'
miRNA:   3'- gaCGGUCuuuuaCGCGGACa--UGCGgC- -5'
6356 5' -53.2 NC_001847.1 + 57025 0.67 0.935098
Target:  5'- cCUGCugCAGAacaagGAGcGCGcCCUGUGgGCCGa -3'
miRNA:   3'- -GACG--GUCU-----UUUaCGC-GGACAUgCGGC- -5'
6356 5' -53.2 NC_001847.1 + 57237 0.67 0.918636
Target:  5'- -cGCCGaGAGGUGCGCCac--CGCCGc -3'
miRNA:   3'- gaCGGUcUUUUACGCGGacauGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 57588 0.67 0.924379
Target:  5'- -gGCCGcGGAAA-GCGCaCgaggGUGCGCCa -3'
miRNA:   3'- gaCGGU-CUUUUaCGCG-Ga---CAUGCGGc -5'
6356 5' -53.2 NC_001847.1 + 58679 0.71 0.785342
Target:  5'- gCUGCCGuGGAAGcGCGUCUGUGcCGCgGc -3'
miRNA:   3'- -GACGGU-CUUUUaCGCGGACAU-GCGgC- -5'
6356 5' -53.2 NC_001847.1 + 59312 0.75 0.548039
Target:  5'- gUGCCAGGGcGcgGCGCCggcgGCGCCGu -3'
miRNA:   3'- gACGGUCUU-UuaCGCGGaca-UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 59498 0.69 0.839342
Target:  5'- -cGgCAGggGGUGCGCCg--AgGCCGc -3'
miRNA:   3'- gaCgGUCuuUUACGCGGacaUgCGGC- -5'
6356 5' -53.2 NC_001847.1 + 59608 0.7 0.804031
Target:  5'- -cGCCgAGAucgcgcGGUGCGCC-GUGCGCUGc -3'
miRNA:   3'- gaCGG-UCUu-----UUACGCGGaCAUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.