miRNA display CGI


Results 41 - 60 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6356 5' -53.2 NC_001847.1 + 99722 0.69 0.847688
Target:  5'- gUGCuCAGcAucUGCGCCUcGUAgGCCGa -3'
miRNA:   3'- gACG-GUCuUuuACGCGGA-CAUgCGGC- -5'
6356 5' -53.2 NC_001847.1 + 99627 0.71 0.785342
Target:  5'- -cGCC-GAGGAUGCGCUcGgcgcGCGCCGu -3'
miRNA:   3'- gaCGGuCUUUUACGCGGaCa---UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 99509 0.68 0.912639
Target:  5'- -aGCCuGGAGuuUGCGCCgagccccGCGCCGc -3'
miRNA:   3'- gaCGG-UCUUuuACGCGGaca----UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 98871 0.67 0.940075
Target:  5'- --cCCGGAAGggcgcGUGCGCCUGggcgGCccagGCCGg -3'
miRNA:   3'- gacGGUCUUU-----UACGCGGACa---UG----CGGC- -5'
6356 5' -53.2 NC_001847.1 + 98775 0.66 0.95748
Target:  5'- gCUGcCCGGGccgcGGcgGCGCCgcgugGcGCGCCGc -3'
miRNA:   3'- -GAC-GGUCU----UUuaCGCGGa----CaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 96771 0.68 0.912639
Target:  5'- gUGCCAGugccgGUGCCg--GCGCUGg -3'
miRNA:   3'- gACGGUCuuuuaCGCGGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 96629 0.67 0.924379
Target:  5'- -gGCCAGAGcacaGCGCCggcgaccGCGCCGc -3'
miRNA:   3'- gaCGGUCUUuua-CGCGGaca----UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 96571 0.72 0.695118
Target:  5'- uCUGCUGGcc-GUGUGCCUGgGCGCCc -3'
miRNA:   3'- -GACGGUCuuuUACGCGGACaUGCGGc -5'
6356 5' -53.2 NC_001847.1 + 96288 0.71 0.775771
Target:  5'- aCUGCgagCAGguGGUGUGUgaGUGCGCCGc -3'
miRNA:   3'- -GACG---GUCuuUUACGCGgaCAUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 94031 0.69 0.863745
Target:  5'- cCUGCCGGGAucgaC-CCUaGUGCGCCGg -3'
miRNA:   3'- -GACGGUCUUuuacGcGGA-CAUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 93845 0.69 0.863745
Target:  5'- -cGCCGGAAAcgucGCGCac-UACGCCGg -3'
miRNA:   3'- gaCGGUCUUUua--CGCGgacAUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 89965 0.66 0.961222
Target:  5'- aCUGCCagcgcgcggcGGAAGcgGUGCUgc-GCGCCGc -3'
miRNA:   3'- -GACGG----------UCUUUuaCGCGGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 89816 0.68 0.885432
Target:  5'- cCUGCCAagcgcuuuauuccGGAAAcgcGCGCCUGcgacCGCCGg -3'
miRNA:   3'- -GACGGU-------------CUUUUa--CGCGGACau--GCGGC- -5'
6356 5' -53.2 NC_001847.1 + 89347 0.66 0.95748
Target:  5'- -cGCCGGGcuuUGCGCgCuucggagcugUGUugGCCGa -3'
miRNA:   3'- gaCGGUCUuuuACGCG-G----------ACAugCGGC- -5'
6356 5' -53.2 NC_001847.1 + 88209 0.71 0.775771
Target:  5'- gCUGCCGGAcacccAAAaGCGCCU---CGCCGg -3'
miRNA:   3'- -GACGGUCU-----UUUaCGCGGAcauGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 84767 0.66 0.956311
Target:  5'- -aGCCGGcgGcgGCGCC-GUccuuagcgucggccGCGCCGc -3'
miRNA:   3'- gaCGGUCuuUuaCGCGGaCA--------------UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 84703 0.68 0.899887
Target:  5'- -gGCCguAGAAGGcGCuGCCUuUGCGCCGg -3'
miRNA:   3'- gaCGG--UCUUUUaCG-CGGAcAUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 82732 0.66 0.944799
Target:  5'- -cGCgCGGGcccaGCGCCUGgagcacgGCGCCGu -3'
miRNA:   3'- gaCG-GUCUuuuaCGCGGACa------UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 82597 0.78 0.411959
Target:  5'- -cGCUcGcgGcgGCGCCUGUGCGCCGc -3'
miRNA:   3'- gaCGGuCuuUuaCGCGGACAUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 82100 0.76 0.507306
Target:  5'- -cGCCGGAGg--GCGCCUGcguuUGCGCCu -3'
miRNA:   3'- gaCGGUCUUuuaCGCGGAC----AUGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.