miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6356 5' -53.2 NC_001847.1 + 122882 0.7 0.822055
Target:  5'- -cGCuCGGguGGUGCGUCUGUGuccauagcauCGCCGg -3'
miRNA:   3'- gaCG-GUCuuUUACGCGGACAU----------GCGGC- -5'
6356 5' -53.2 NC_001847.1 + 117569 0.66 0.959005
Target:  5'- aCUGCaCGGggG--GCGCgCUGcccggccaaaacgucUGCGCCGg -3'
miRNA:   3'- -GACG-GUCuuUuaCGCG-GAC---------------AUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 117405 0.68 0.906388
Target:  5'- -cGCgAGGccGUGgcCGCCUcGUACGCCGa -3'
miRNA:   3'- gaCGgUCUuuUAC--GCGGA-CAUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 115134 0.66 0.961222
Target:  5'- -cGCCcuauuGGAAGUGCGCugcuCUGgcgggGCGCCu -3'
miRNA:   3'- gaCGGu----CUUUUACGCG----GACa----UGCGGc -5'
6356 5' -53.2 NC_001847.1 + 113355 0.66 0.944799
Target:  5'- -gGCCcGggGAcccGCGCCcGgccgGCGCCGg -3'
miRNA:   3'- gaCGGuCuuUUa--CGCGGaCa---UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 111414 0.66 0.961222
Target:  5'- -cGCCAGggGcgGCGCUcg---GCCGg -3'
miRNA:   3'- gaCGGUCuuUuaCGCGGacaugCGGC- -5'
6356 5' -53.2 NC_001847.1 + 111253 0.73 0.67419
Target:  5'- -gGUCGGAGGcgGCGCCggGUcggaggcgGCGCCGg -3'
miRNA:   3'- gaCGGUCUUUuaCGCGGa-CA--------UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 110883 0.71 0.765086
Target:  5'- -cGCCAGcgGggGgGCCUGUccaccacggcgagGCGCCGa -3'
miRNA:   3'- gaCGGUCuuUuaCgCGGACA-------------UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 109163 0.66 0.960859
Target:  5'- -aGCCAGAGccggccgcGCGCUUGUucccaagGCGUCGg -3'
miRNA:   3'- gaCGGUCUUuua-----CGCGGACA-------UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 108759 0.67 0.924379
Target:  5'- cCUGCCGcgcuggGCGCCggacGCGCCGg -3'
miRNA:   3'- -GACGGUcuuuuaCGCGGaca-UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 106974 0.68 0.899223
Target:  5'- -cGCCAGGuaacccAAcgGCGCCucggcgaucaugcUGUugGCCa -3'
miRNA:   3'- gaCGGUCU------UUuaCGCGG-------------ACAugCGGc -5'
6356 5' -53.2 NC_001847.1 + 106722 0.67 0.940075
Target:  5'- -aGCCAGcgcggGCGCCgGUugcGCGCCc -3'
miRNA:   3'- gaCGGUCuuuuaCGCGGaCA---UGCGGc -5'
6356 5' -53.2 NC_001847.1 + 106066 0.67 0.924379
Target:  5'- -cGCCGGcggcAGggGCGCCg--GCGCCGc -3'
miRNA:   3'- gaCGGUCu---UUuaCGCGGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 105662 0.66 0.953498
Target:  5'- -gGCCGGAGAgcGUGcCGCCUcGgcCGCgGg -3'
miRNA:   3'- gaCGGUCUUU--UAC-GCGGA-CauGCGgC- -5'
6356 5' -53.2 NC_001847.1 + 104456 0.67 0.929866
Target:  5'- -cGCgCAGGuacacGUGCGCCUGcccgACgGCCGg -3'
miRNA:   3'- gaCG-GUCUuu---UACGCGGACa---UG-CGGC- -5'
6356 5' -53.2 NC_001847.1 + 104172 0.67 0.935098
Target:  5'- -gGCCAuGuccuUGCGCCcGUcgaGCGCCGg -3'
miRNA:   3'- gaCGGU-CuuuuACGCGGaCA---UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 104125 0.66 0.953498
Target:  5'- uUGCCGGcgcgcgcGCGCCggcaACGCCGg -3'
miRNA:   3'- gACGGUCuuuua--CGCGGaca-UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 102043 0.68 0.899887
Target:  5'- -gGCCAGGAug-GCGCgagcgCUGUacugcGCGCCGc -3'
miRNA:   3'- gaCGGUCUUuuaCGCG-----GACA-----UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 100891 0.69 0.855825
Target:  5'- -cGCCGGuc--UGCGCCUc-GCGCCGc -3'
miRNA:   3'- gaCGGUCuuuuACGCGGAcaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 100848 0.66 0.95748
Target:  5'- -gGCCAGGGccGGaGCGCCggccCGCCGg -3'
miRNA:   3'- gaCGGUCUU--UUaCGCGGacauGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.