miRNA display CGI


Results 61 - 80 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6356 5' -53.2 NC_001847.1 + 72070 0.67 0.924379
Target:  5'- -cGCgCAGAAGcUGCGCCc--GCGCCu -3'
miRNA:   3'- gaCG-GUCUUUuACGCGGacaUGCGGc -5'
6356 5' -53.2 NC_001847.1 + 96629 0.67 0.924379
Target:  5'- -gGCCAGAGcacaGCGCCggcgaccGCGCCGc -3'
miRNA:   3'- gaCGGUCUUuua-CGCGGaca----UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 18682 0.67 0.924379
Target:  5'- gCUGagCAGAAcc-GCGCCgcgcGUGCGCCa -3'
miRNA:   3'- -GACg-GUCUUuuaCGCGGa---CAUGCGGc -5'
6356 5' -53.2 NC_001847.1 + 53719 0.67 0.924379
Target:  5'- -gGCCGGcggcugGCG-CUGUGCGCCu -3'
miRNA:   3'- gaCGGUCuuuua-CGCgGACAUGCGGc -5'
6356 5' -53.2 NC_001847.1 + 3253 0.67 0.924379
Target:  5'- -cGCCGGcggcAGggGCGCCg--GCGCCGc -3'
miRNA:   3'- gaCGGUCu---UUuaCGCGGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 106066 0.67 0.924379
Target:  5'- -cGCCGGcggcAGggGCGCCg--GCGCCGc -3'
miRNA:   3'- gaCGGUCu---UUuaCGCGGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 57237 0.67 0.918636
Target:  5'- -cGCCGaGAGGUGCGCCac--CGCCGc -3'
miRNA:   3'- gaCGGUcUUUUACGCGGacauGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 96771 0.68 0.912639
Target:  5'- gUGCCAGugccgGUGCCg--GCGCUGg -3'
miRNA:   3'- gACGGUCuuuuaCGCGGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 99509 0.68 0.912639
Target:  5'- -aGCCuGGAGuuUGCGCCgagccccGCGCCGc -3'
miRNA:   3'- gaCGG-UCUUuuACGCGGaca----UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 28187 0.68 0.912639
Target:  5'- cCUGgCGGccgc-GCGCCUGcGCGCCa -3'
miRNA:   3'- -GACgGUCuuuuaCGCGGACaUGCGGc -5'
6356 5' -53.2 NC_001847.1 + 23051 0.68 0.912639
Target:  5'- -aGCCAGuccaccuUGCGCCggacCGCCGg -3'
miRNA:   3'- gaCGGUCuuuu---ACGCGGacauGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 15744 0.68 0.912025
Target:  5'- -gGCCGGGAAGcacGCGCCaaagGUguacccgcgagccGCGCCGa -3'
miRNA:   3'- gaCGGUCUUUUa--CGCGGa---CA-------------UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 32903 0.68 0.911409
Target:  5'- -cGCCGcgcgcgaGCGCCUGgACGCCGu -3'
miRNA:   3'- gaCGGUcuuuua-CGCGGACaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 53801 0.68 0.906388
Target:  5'- -cGCgAGGAGGucUGCGCCcccugGcGCGCCGg -3'
miRNA:   3'- gaCGgUCUUUU--ACGCGGa----CaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 117405 0.68 0.906388
Target:  5'- -cGCgAGGccGUGgcCGCCUcGUACGCCGa -3'
miRNA:   3'- gaCGgUCUuuUAC--GCGGA-CAUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 8216 0.68 0.906388
Target:  5'- gUGCCAGcAGAAgcagcUGCGCCac-GCGCUGg -3'
miRNA:   3'- gACGGUC-UUUU-----ACGCGGacaUGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 19270 0.68 0.906388
Target:  5'- -aGCCGGcggcgcaGCGUCUGUGCGgCGg -3'
miRNA:   3'- gaCGGUCuuuua--CGCGGACAUGCgGC- -5'
6356 5' -53.2 NC_001847.1 + 38500 0.68 0.899887
Target:  5'- -cGCCGGggGGcgGCGCg-GU-CGCCGg -3'
miRNA:   3'- gaCGGUCuuUUa-CGCGgaCAuGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 102043 0.68 0.899887
Target:  5'- -gGCCAGGAug-GCGCgagcgCUGUacugcGCGCCGc -3'
miRNA:   3'- gaCGGUCUUuuaCGCG-----GACA-----UGCGGC- -5'
6356 5' -53.2 NC_001847.1 + 84703 0.68 0.899887
Target:  5'- -gGCCguAGAAGGcGCuGCCUuUGCGCCGg -3'
miRNA:   3'- gaCGG--UCUUUUaCG-CGGAcAUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.