miRNA display CGI


Results 1 - 20 of 464 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 3' -56.1 NC_001847.1 + 606 0.65 0.890992
Target:  5'- uGCccGACG-ACGCGCCCcguguaccaccacaUGCGCCg- -3'
miRNA:   3'- uCGcuUUGCuUGUGCGGG--------------ACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 10214 0.66 0.886871
Target:  5'- gGGCcca--GGGCGCGCCCgcugucgcccccggcGCGCCUGc -3'
miRNA:   3'- -UCGcuuugCUUGUGCGGGa--------------CGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 113027 0.66 0.886871
Target:  5'- gGGCcca--GGGCGCGCCCgcugucgcccccggcGCGCCUGc -3'
miRNA:   3'- -UCGcuuugCUUGUGCGGGa--------------CGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 75404 0.66 0.886176
Target:  5'- cAGCGAGuCGAGCucgcgccggACGCCgaGCGCg-- -3'
miRNA:   3'- -UCGCUUuGCUUG---------UGCGGgaCGCGgac -5'
6357 3' -56.1 NC_001847.1 + 38597 0.66 0.886176
Target:  5'- uGGCGu--UGAGCGCGCgC-GuCGCCUGa -3'
miRNA:   3'- -UCGCuuuGCUUGUGCGgGaC-GCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 48644 0.66 0.886176
Target:  5'- cGGCGggGCGccGC-CGCCCccGCaGCCUc -3'
miRNA:   3'- -UCGCuuUGCu-UGuGCGGGa-CG-CGGAc -5'
6357 3' -56.1 NC_001847.1 + 79973 0.66 0.886176
Target:  5'- aAGCu---CcAGCGCGCCCcGCGUCUGg -3'
miRNA:   3'- -UCGcuuuGcUUGUGCGGGaCGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 83123 0.66 0.886176
Target:  5'- uGGCGcGAGCGcuaguGCGCGCCUgcUGCGUCc- -3'
miRNA:   3'- -UCGC-UUUGCu----UGUGCGGG--ACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 7699 0.66 0.886176
Target:  5'- uGCGguGCugGAGCGCGCCUUGgGCa-- -3'
miRNA:   3'- uCGCuuUG--CUUGUGCGGGACgCGgac -5'
6357 3' -56.1 NC_001847.1 + 58581 0.66 0.886176
Target:  5'- cAGCuAAGCGGGC-CGCUUUGCGCg-- -3'
miRNA:   3'- -UCGcUUUGCUUGuGCGGGACGCGgac -5'
6357 3' -56.1 NC_001847.1 + 75556 0.66 0.886176
Target:  5'- cGGCGGc-CGAGC-UGCCCgugaGCGCCg- -3'
miRNA:   3'- -UCGCUuuGCUUGuGCGGGa---CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 79968 0.66 0.886176
Target:  5'- uGGaaAAGCuccAGCGCGCCCcGCGUCUGg -3'
miRNA:   3'- -UCgcUUUGc--UUGUGCGGGaCGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 46806 0.66 0.886176
Target:  5'- cGGC-AGACGAGCACagGCCC-GCGCg-- -3'
miRNA:   3'- -UCGcUUUGCUUGUG--CGGGaCGCGgac -5'
6357 3' -56.1 NC_001847.1 + 62438 0.66 0.886176
Target:  5'- gAGCGuguuuuCGucgGCGCgGCUCUGCGCCg- -3'
miRNA:   3'- -UCGCuuu---GCu--UGUG-CGGGACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 85216 0.66 0.886176
Target:  5'- cGGCGuccAACGugcGCACGCgCaGCGCCa- -3'
miRNA:   3'- -UCGCu--UUGCu--UGUGCGgGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 93964 0.66 0.886176
Target:  5'- gGGCGcccucuuAACacGCGCGCCC-GCGCCg- -3'
miRNA:   3'- -UCGCu------UUGcuUGUGCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 100443 0.66 0.886176
Target:  5'- cAGCGcgGCGcGCAaGUCCUcGCGCCa- -3'
miRNA:   3'- -UCGCuuUGCuUGUgCGGGA-CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 117452 0.66 0.886176
Target:  5'- cGGCGugGCcGACaACGCCaCUggcggugcGCGCCUGg -3'
miRNA:   3'- -UCGCuuUGcUUG-UGCGG-GA--------CGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 119069 0.66 0.886176
Target:  5'- cAGCGuacUGGAgGCGCCCagcagagGCGCCg- -3'
miRNA:   3'- -UCGCuuuGCUUgUGCGGGa------CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 64230 0.66 0.886176
Target:  5'- cGGCGgcGCGAAgcUGCCCgaGUGCCg- -3'
miRNA:   3'- -UCGCuuUGCUUguGCGGGa-CGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.