Results 1 - 20 of 464 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6357 | 3' | -56.1 | NC_001847.1 | + | 6903 | 0.85 | 0.09116 |
Target: 5'- cGGCGAGcGCGcGCGCGCCCUGCGCgCUGu -3' miRNA: 3'- -UCGCUU-UGCuUGUGCGGGACGCG-GAC- -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 54592 | 0.74 | 0.457981 |
Target: 5'- gGGCGGcgcuGGCGGcGCGCGCCC-GCGCCg- -3' miRNA: 3'- -UCGCU----UUGCU-UGUGCGGGaCGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 131128 | 0.73 | 0.496126 |
Target: 5'- cGCGAGagGCGGGCGCcggGCCCgGCGCCc- -3' miRNA: 3'- uCGCUU--UGCUUGUG---CGGGaCGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 79968 | 0.66 | 0.886176 |
Target: 5'- uGGaaAAGCuccAGCGCGCCCcGCGUCUGg -3' miRNA: 3'- -UCgcUUUGc--UUGUGCGGGaCGCGGAC- -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 58793 | 0.8 | 0.199378 |
Target: 5'- cGGCaGGAACGGACAgCGCCUgcgccgGCGCCUGg -3' miRNA: 3'- -UCG-CUUUGCUUGU-GCGGGa-----CGCGGAC- -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 94252 | 0.78 | 0.267799 |
Target: 5'- cGUGGAGCGGcuCGCGCCCUGCGUCc- -3' miRNA: 3'- uCGCUUUGCUu-GUGCGGGACGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 64023 | 0.76 | 0.338344 |
Target: 5'- cGGCGGGACGGGCuuGCCCgcgguucaCGCCUGg -3' miRNA: 3'- -UCGCUUUGCUUGugCGGGac------GCGGAC- -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 122820 | 0.76 | 0.338344 |
Target: 5'- cAGCGAGccgGCGGGCGCGCCCaccgggcccGCGcCCUGg -3' miRNA: 3'- -UCGCUU---UGCUUGUGCGGGa--------CGC-GGAC- -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 3941 | 0.75 | 0.386751 |
Target: 5'- cAGCGGgcGGCGAGCGCGaCCCacaGCGCCa- -3' miRNA: 3'- -UCGCU--UUGCUUGUGC-GGGa--CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 36977 | 0.74 | 0.457981 |
Target: 5'- gGGCGccGGCGAGCGgGCCC-GCGCCg- -3' miRNA: 3'- -UCGCu-UUGCUUGUgCGGGaCGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 43093 | 0.75 | 0.39525 |
Target: 5'- cGGCG--GCGGAgGCGCCCggagGCGCCg- -3' miRNA: 3'- -UCGCuuUGCUUgUGCGGGa---CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 78647 | 0.75 | 0.378373 |
Target: 5'- uGGCGgcGCGGucGCGCGCgCCUGCGUCg- -3' miRNA: 3'- -UCGCuuUGCU--UGUGCG-GGACGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 124927 | 0.85 | 0.093637 |
Target: 5'- gGGCGAcAGCGGGCGCGCCCUGgGCCc- -3' miRNA: 3'- -UCGCU-UUGCUUGUGCGGGACgCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 74644 | 0.75 | 0.40387 |
Target: 5'- cGCGAGGCgGGGCA-GCUgCUGCGCCUGg -3' miRNA: 3'- uCGCUUUG-CUUGUgCGG-GACGCGGAC- -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 77986 | 0.83 | 0.125399 |
Target: 5'- uGGCGGgcGGCGAGCGCGCCCUGCuGUUUGa -3' miRNA: 3'- -UCGCU--UUGCUUGUGCGGGACG-CGGAC- -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 53265 | 0.75 | 0.370117 |
Target: 5'- cGGCGggGCGcuGCGCGCCCagGCGCg-- -3' miRNA: 3'- -UCGCuuUGCu-UGUGCGGGa-CGCGgac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 14811 | 0.74 | 0.44869 |
Target: 5'- cGGCGGAGCuGcGCgGCGCCCUGCGCg-- -3' miRNA: 3'- -UCGCUUUG-CuUG-UGCGGGACGCGgac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 78930 | 0.73 | 0.48645 |
Target: 5'- uGGaCGAAGCccuGCugGCCCUGUGCCc- -3' miRNA: 3'- -UC-GCUUUGcu-UGugCGGGACGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 12038 | 0.82 | 0.142928 |
Target: 5'- cGGCGGAGCGcuGgACGCCCUGCGCgCUGc -3' miRNA: 3'- -UCGCUUUGCu-UgUGCGGGACGCG-GAC- -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 30141 | 0.78 | 0.274284 |
Target: 5'- cGCGAcGCGcGGCGCGCCgUGCGcCCUGg -3' miRNA: 3'- uCGCUuUGC-UUGUGCGGgACGC-GGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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