Results 1 - 20 of 640 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6357 | 5' | -57.2 | NC_001847.1 | + | 132833 | 0.66 | 0.848071 |
Target: 5'- aGCGGGCgugucgccaugggcaGCCGucuuGGACUUUG-GCGCg -3' miRNA: 3'- aCGUCCG---------------CGGUuc--UCUGAAGCgCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 64254 | 0.66 | 0.84566 |
Target: 5'- gGCGGGCcCUAGGGGACUauaaagcugccccugCGCuCGCu -3' miRNA: 3'- aCGUCCGcGGUUCUCUGAa--------------GCGcGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 99516 | 0.66 | 0.844853 |
Target: 5'- aGUuuGCGCCGAGccccGCgcCGCGCGCu -3' miRNA: 3'- aCGucCGCGGUUCuc--UGaaGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 43780 | 0.66 | 0.844853 |
Target: 5'- cUGCcGGUGCU---GGACg-CGCGCGCc -3' miRNA: 3'- -ACGuCCGCGGuucUCUGaaGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 54588 | 0.66 | 0.844853 |
Target: 5'- gGCuGGGCGgCGcu-GGCggCGCGCGCc -3' miRNA: 3'- aCG-UCCGCgGUucuCUGaaGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 13117 | 0.66 | 0.844853 |
Target: 5'- gGCcgGGGCGCgCGGGcGGCgcCGCGcCGCc -3' miRNA: 3'- aCG--UCCGCG-GUUCuCUGaaGCGC-GCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 21504 | 0.66 | 0.844853 |
Target: 5'- uUGCcgGGcGCGCCucggcGGGGGCcgCGCGgGCc -3' miRNA: 3'- -ACG--UC-CGCGGu----UCUCUGaaGCGCgCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 18242 | 0.66 | 0.844853 |
Target: 5'- cGCGGGUGgauCCAAGAuGGCcgcgacCGCgGCGCg -3' miRNA: 3'- aCGUCCGC---GGUUCU-CUGaa----GCG-CGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 30265 | 0.66 | 0.844853 |
Target: 5'- uUGCAGcGCGCCGcggcgcAGAcGACacaaGCGCuGCa -3' miRNA: 3'- -ACGUC-CGCGGU------UCU-CUGaag-CGCG-CG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 35298 | 0.66 | 0.844853 |
Target: 5'- cGCAGcccCGCCGAGcGg---CGCGCGCu -3' miRNA: 3'- aCGUCc--GCGGUUCuCugaaGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 80655 | 0.66 | 0.844853 |
Target: 5'- cGCGggagacccGGCGCCGGGGagccgaacGGCU--GCGCGCc -3' miRNA: 3'- aCGU--------CCGCGGUUCU--------CUGAagCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 131821 | 0.66 | 0.844853 |
Target: 5'- gGCcGGCGCCGgcggcAGcGGCgccCGCGcCGCg -3' miRNA: 3'- aCGuCCGCGGU-----UCuCUGaa-GCGC-GCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 86558 | 0.66 | 0.844853 |
Target: 5'- aGgGGGaCGCCGAG-GACggCGCcgaagacggcgGCGCu -3' miRNA: 3'- aCgUCC-GCGGUUCuCUGaaGCG-----------CGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 68674 | 0.66 | 0.844853 |
Target: 5'- cUGCGGGCGacu-GAGACUacCGUGCccGCa -3' miRNA: 3'- -ACGUCCGCgguuCUCUGAa-GCGCG--CG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 74485 | 0.66 | 0.844853 |
Target: 5'- cGCgaGGGCGC--GGAcGCggcCGCGCGCa -3' miRNA: 3'- aCG--UCCGCGguUCUcUGaa-GCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 96873 | 0.66 | 0.844853 |
Target: 5'- gGCGGuccGCGCUgggGAGGGACcgccgugcUCGCGCGg -3' miRNA: 3'- aCGUC---CGCGG---UUCUCUGa-------AGCGCGCg -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 69493 | 0.66 | 0.844853 |
Target: 5'- gUGCGGGCGCgCAcGcGGCcgUUgGCgGCGCa -3' miRNA: 3'- -ACGUCCGCG-GUuCuCUG--AAgCG-CGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 119542 | 0.66 | 0.844853 |
Target: 5'- gGCAGGCugGgCAAGGGGCg-CGCG-GCc -3' miRNA: 3'- aCGUCCG--CgGUUCUCUGaaGCGCgCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 29008 | 0.66 | 0.844853 |
Target: 5'- gGCcGGCGCCGgcggcAGcGGCgccCGCGcCGCg -3' miRNA: 3'- aCGuCCGCGGU-----UCuCUGaa-GCGC-GCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 59345 | 0.66 | 0.844853 |
Target: 5'- gGC-GGCGgCGAGG----UCGCGCGCc -3' miRNA: 3'- aCGuCCGCgGUUCUcugaAGCGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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