miRNA display CGI


Results 1 - 20 of 640 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 5' -57.2 NC_001847.1 + 132833 0.66 0.848071
Target:  5'- aGCGGGCgugucgccaugggcaGCCGucuuGGACUUUG-GCGCg -3'
miRNA:   3'- aCGUCCG---------------CGGUuc--UCUGAAGCgCGCG- -5'
6357 5' -57.2 NC_001847.1 + 64254 0.66 0.84566
Target:  5'- gGCGGGCcCUAGGGGACUauaaagcugccccugCGCuCGCu -3'
miRNA:   3'- aCGUCCGcGGUUCUCUGAa--------------GCGcGCG- -5'
6357 5' -57.2 NC_001847.1 + 99516 0.66 0.844853
Target:  5'- aGUuuGCGCCGAGccccGCgcCGCGCGCu -3'
miRNA:   3'- aCGucCGCGGUUCuc--UGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 131821 0.66 0.844853
Target:  5'- gGCcGGCGCCGgcggcAGcGGCgccCGCGcCGCg -3'
miRNA:   3'- aCGuCCGCGGU-----UCuCUGaa-GCGC-GCG- -5'
6357 5' -57.2 NC_001847.1 + 18242 0.66 0.844853
Target:  5'- cGCGGGUGgauCCAAGAuGGCcgcgacCGCgGCGCg -3'
miRNA:   3'- aCGUCCGC---GGUUCU-CUGaa----GCG-CGCG- -5'
6357 5' -57.2 NC_001847.1 + 86558 0.66 0.844853
Target:  5'- aGgGGGaCGCCGAG-GACggCGCcgaagacggcgGCGCu -3'
miRNA:   3'- aCgUCC-GCGGUUCuCUGaaGCG-----------CGCG- -5'
6357 5' -57.2 NC_001847.1 + 96873 0.66 0.844853
Target:  5'- gGCGGuccGCGCUgggGAGGGACcgccgugcUCGCGCGg -3'
miRNA:   3'- aCGUC---CGCGG---UUCUCUGa-------AGCGCGCg -5'
6357 5' -57.2 NC_001847.1 + 21504 0.66 0.844853
Target:  5'- uUGCcgGGcGCGCCucggcGGGGGCcgCGCGgGCc -3'
miRNA:   3'- -ACG--UC-CGCGGu----UCUCUGaaGCGCgCG- -5'
6357 5' -57.2 NC_001847.1 + 54588 0.66 0.844853
Target:  5'- gGCuGGGCGgCGcu-GGCggCGCGCGCc -3'
miRNA:   3'- aCG-UCCGCgGUucuCUGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 80655 0.66 0.844853
Target:  5'- cGCGggagacccGGCGCCGGGGagccgaacGGCU--GCGCGCc -3'
miRNA:   3'- aCGU--------CCGCGGUUCU--------CUGAagCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 74485 0.66 0.844853
Target:  5'- cGCgaGGGCGC--GGAcGCggcCGCGCGCa -3'
miRNA:   3'- aCG--UCCGCGguUCUcUGaa-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 43780 0.66 0.844853
Target:  5'- cUGCcGGUGCU---GGACg-CGCGCGCc -3'
miRNA:   3'- -ACGuCCGCGGuucUCUGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 94363 0.66 0.844853
Target:  5'- cGCuGGCGC--GGcGGCgucugcCGCGCGCa -3'
miRNA:   3'- aCGuCCGCGguUCuCUGaa----GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 59345 0.66 0.844853
Target:  5'- gGC-GGCGgCGAGG----UCGCGCGCc -3'
miRNA:   3'- aCGuCCGCgGUUCUcugaAGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 29008 0.66 0.844853
Target:  5'- gGCcGGCGCCGgcggcAGcGGCgccCGCGcCGCg -3'
miRNA:   3'- aCGuCCGCGGU-----UCuCUGaa-GCGC-GCG- -5'
6357 5' -57.2 NC_001847.1 + 119542 0.66 0.844853
Target:  5'- gGCAGGCugGgCAAGGGGCg-CGCG-GCc -3'
miRNA:   3'- aCGUCCG--CgGUUCUCUGaaGCGCgCG- -5'
6357 5' -57.2 NC_001847.1 + 69493 0.66 0.844853
Target:  5'- gUGCGGGCGCgCAcGcGGCcgUUgGCgGCGCa -3'
miRNA:   3'- -ACGUCCGCG-GUuCuCUG--AAgCG-CGCG- -5'
6357 5' -57.2 NC_001847.1 + 13117 0.66 0.844853
Target:  5'- gGCcgGGGCGCgCGGGcGGCgcCGCGcCGCc -3'
miRNA:   3'- aCG--UCCGCG-GUUCuCUGaaGCGC-GCG- -5'
6357 5' -57.2 NC_001847.1 + 30265 0.66 0.844853
Target:  5'- uUGCAGcGCGCCGcggcgcAGAcGACacaaGCGCuGCa -3'
miRNA:   3'- -ACGUC-CGCGGU------UCU-CUGaag-CGCG-CG- -5'
6357 5' -57.2 NC_001847.1 + 35298 0.66 0.844853
Target:  5'- cGCAGcccCGCCGAGcGg---CGCGCGCu -3'
miRNA:   3'- aCGUCc--GCGGUUCuCugaaGCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.