miRNA display CGI


Results 41 - 60 of 449 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6358 3' -63 NC_001847.1 + 124579 0.69 0.377822
Target:  5'- gGCCgCCG-GCGCCGggcccgGCGCCGGCc- -3'
miRNA:   3'- -CGGgGGCaUGUGGCga----CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 123810 0.66 0.53726
Target:  5'- uGCUCCCGcuccgGCGCCaGCcGCccGCCGGCc- -3'
miRNA:   3'- -CGGGGGCa----UGUGG-CGaCG--CGGCCGau -5'
6358 3' -63 NC_001847.1 + 123486 0.66 0.518176
Target:  5'- cGCCCCCuu-CACCGC--CGCCGGa-- -3'
miRNA:   3'- -CGGGGGcauGUGGCGacGCGGCCgau -5'
6358 3' -63 NC_001847.1 + 123320 0.69 0.377822
Target:  5'- cGCCCCCcccccCGCgCGCUGUGCCGuCUGa -3'
miRNA:   3'- -CGGGGGcau--GUG-GCGACGCGGCcGAU- -5'
6358 3' -63 NC_001847.1 + 122694 0.73 0.220114
Target:  5'- aGgCUCCGccGCGCgCGCUGUGCCGGCg- -3'
miRNA:   3'- -CgGGGGCa-UGUG-GCGACGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 121855 0.67 0.471743
Target:  5'- cGCCCgCGUaGCGCgCGCacaGgGCCGGCa- -3'
miRNA:   3'- -CGGGgGCA-UGUG-GCGa--CgCGGCCGau -5'
6358 3' -63 NC_001847.1 + 121340 1.07 0.000739
Target:  5'- gGCCCCCGUACACCGCUGCGCCGGCUAc -3'
miRNA:   3'- -CGGGGGCAUGUGGCGACGCGGCCGAU- -5'
6358 3' -63 NC_001847.1 + 120994 0.77 0.122121
Target:  5'- -gCCCCGgcCGCCGCUGCgcaGCCGGCc- -3'
miRNA:   3'- cgGGGGCauGUGGCGACG---CGGCCGau -5'
6358 3' -63 NC_001847.1 + 119825 0.72 0.258726
Target:  5'- cGCCCCCGcUACGCCcgcggcccccgacGCcGUGCCGGUc- -3'
miRNA:   3'- -CGGGGGC-AUGUGG-------------CGaCGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 119355 0.68 0.436163
Target:  5'- cGCCuCCCGccGCGCgGCgcuUGcCGCCGGCg- -3'
miRNA:   3'- -CGG-GGGCa-UGUGgCG---AC-GCGGCCGau -5'
6358 3' -63 NC_001847.1 + 118205 0.66 0.55561
Target:  5'- -gCCCCGUcgcGCACUGagcagaccggcguCUGCGCCGaGCg- -3'
miRNA:   3'- cgGGGGCA---UGUGGC-------------GACGCGGC-CGau -5'
6358 3' -63 NC_001847.1 + 117802 0.66 0.518176
Target:  5'- -aCCCCagcCAgCGCUagaagGCGCCGGCUAc -3'
miRNA:   3'- cgGGGGcauGUgGCGA-----CGCGGCCGAU- -5'
6358 3' -63 NC_001847.1 + 116816 0.66 0.546893
Target:  5'- uGCgCCCGgcaGCugcuCCGCgugauuCGCCGGCUGg -3'
miRNA:   3'- -CGgGGGCa--UGu---GGCGac----GCGGCCGAU- -5'
6358 3' -63 NC_001847.1 + 116427 0.67 0.508735
Target:  5'- cGCCCgCUGgcGCuccCCGCgGCGCUGGCg- -3'
miRNA:   3'- -CGGG-GGCa-UGu--GGCGaCGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 116198 0.67 0.480868
Target:  5'- cGCCgCCaCGgACGCCGCggcgGCGCUGGa-- -3'
miRNA:   3'- -CGG-GG-GCaUGUGGCGa---CGCGGCCgau -5'
6358 3' -63 NC_001847.1 + 115967 0.66 0.53726
Target:  5'- cGCCCCCGccg--UGCUGCGCgGGgUAa -3'
miRNA:   3'- -CGGGGGCaugugGCGACGCGgCCgAU- -5'
6358 3' -63 NC_001847.1 + 115887 0.72 0.253392
Target:  5'- cGCCgCCGgcucGCGCCGCUugGCCGGCUc -3'
miRNA:   3'- -CGGgGGCa---UGUGGCGAcgCGGCCGAu -5'
6358 3' -63 NC_001847.1 + 115809 0.69 0.362144
Target:  5'- gGCUCCgCGcGCugCGCUGCGgCgGGCUc -3'
miRNA:   3'- -CGGGG-GCaUGugGCGACGC-GgCCGAu -5'
6358 3' -63 NC_001847.1 + 115732 0.66 0.546893
Target:  5'- cGCUCCCGcuuUGC-CUGCUGCGUCGccGCg- -3'
miRNA:   3'- -CGGGGGC---AUGuGGCGACGCGGC--CGau -5'
6358 3' -63 NC_001847.1 + 115668 0.67 0.471743
Target:  5'- cGCgUCCGUGCgggugaGCgGCUGCgcgggggcgagaGCCGGCUGc -3'
miRNA:   3'- -CGgGGGCAUG------UGgCGACG------------CGGCCGAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.