miRNA display CGI


Results 21 - 40 of 513 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6359 5' -64.6 NC_001847.1 + 66676 0.66 0.498587
Target:  5'- -cGCCCGCgCgGCgggGCCccGGCCGcGGGCg -3'
miRNA:   3'- acUGGGCG-G-CGaa-CGG--CCGGUcCCCG- -5'
6359 5' -64.6 NC_001847.1 + 204 0.66 0.498587
Target:  5'- -cGCCC-CCGCcc-CCGGCgccCGGGGGCc -3'
miRNA:   3'- acUGGGcGGCGaacGGCCG---GUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 11184 0.66 0.496749
Target:  5'- gGGgCUGCCGCUgguccgcgcgggGCUGGUCGagguugaaguGGGGCc -3'
miRNA:   3'- aCUgGGCGGCGAa-----------CGGCCGGU----------CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 8 0.66 0.495831
Target:  5'- -cGCCgCGCCGC--GCgGGCCcccugcgaccccggGGGGGUg -3'
miRNA:   3'- acUGG-GCGGCGaaCGgCCGG--------------UCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 115256 0.66 0.489427
Target:  5'- cUGACCCacuccGCCGgUUGgCGGUgGcGGGCu -3'
miRNA:   3'- -ACUGGG-----CGGCgAACgGCCGgUcCCCG- -5'
6359 5' -64.6 NC_001847.1 + 9828 0.66 0.489427
Target:  5'- cGGCCCGCCGCcgccaUGagccaCGGCCAGccuuGCc -3'
miRNA:   3'- aCUGGGCGGCGa----ACg----GCCGGUCcc--CG- -5'
6359 5' -64.6 NC_001847.1 + 39389 0.66 0.489427
Target:  5'- cGGCCCgcGCCGCcccCCGcGCCAGaGcGGCc -3'
miRNA:   3'- aCUGGG--CGGCGaacGGC-CGGUC-C-CCG- -5'
6359 5' -64.6 NC_001847.1 + 96980 0.66 0.489427
Target:  5'- ---aCgGCCGCUU-CCGGUCccucGGGGCg -3'
miRNA:   3'- acugGgCGGCGAAcGGCCGGu---CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 77100 0.66 0.489427
Target:  5'- cGGCCCGCgCGCgguagCGGC--GGGGCu -3'
miRNA:   3'- aCUGGGCG-GCGaacg-GCCGguCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 35613 0.66 0.489427
Target:  5'- cGcAUCaCGCCGCc-GCCGGCgGcgcuGGGGCc -3'
miRNA:   3'- aC-UGG-GCGGCGaaCGGCCGgU----CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 32677 0.66 0.489427
Target:  5'- cUGcAUCCGCCGgUgGCUGG--AGGGGCg -3'
miRNA:   3'- -AC-UGGGCGGCgAaCGGCCggUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 130915 0.66 0.489427
Target:  5'- cGugCCGgCGCgcGCCGGCaccgcgcaGGGCu -3'
miRNA:   3'- aCugGGCgGCGaaCGGCCGguc-----CCCG- -5'
6359 5' -64.6 NC_001847.1 + 114405 0.66 0.489427
Target:  5'- aGGCCCGCCuCaccGCCGGUCuguccgacGGcGGCa -3'
miRNA:   3'- aCUGGGCGGcGaa-CGGCCGGu-------CC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 27882 0.66 0.489427
Target:  5'- gGACgcggaCGUCGCggagUGCgccgaGGCCgaGGGGGCg -3'
miRNA:   3'- aCUGg----GCGGCGa---ACGg----CCGG--UCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 28399 0.66 0.489427
Target:  5'- --cCCCGCCGCggcGCCaGCgCGGGcGCg -3'
miRNA:   3'- acuGGGCGGCGaa-CGGcCG-GUCCcCG- -5'
6359 5' -64.6 NC_001847.1 + 17706 0.66 0.489427
Target:  5'- cGGCCaCGCCGCagUGCaCGuaCAGcGGCu -3'
miRNA:   3'- aCUGG-GCGGCGa-ACG-GCcgGUCcCCG- -5'
6359 5' -64.6 NC_001847.1 + 131212 0.66 0.489427
Target:  5'- --cCCCGCCGCggcGCCaGCgCGGGcGCg -3'
miRNA:   3'- acuGGGCGGCGaa-CGGcCG-GUCCcCG- -5'
6359 5' -64.6 NC_001847.1 + 131901 0.66 0.489427
Target:  5'- --cCCUGCCGCcggcgaGCaCGGCgCGGGcGGCg -3'
miRNA:   3'- acuGGGCGGCGaa----CG-GCCG-GUCC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 89045 0.66 0.489427
Target:  5'- -aGCCC-CCGCggaaGCgGGCCGGGcgccuGGCg -3'
miRNA:   3'- acUGGGcGGCGaa--CGgCCGGUCC-----CCG- -5'
6359 5' -64.6 NC_001847.1 + 108755 0.66 0.489427
Target:  5'- cGuuCCUGCCGCgcugggcGCCGgacgcGCCGGGcGGCc -3'
miRNA:   3'- aCu-GGGCGGCGaa-----CGGC-----CGGUCC-CCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.