miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6360 3' -56.7 NC_001847.1 + 111210 0.68 0.762972
Target:  5'- uGGGGCu--GCCGGGAUagCGGGagGGc -3'
miRNA:   3'- -CCCCGuuuCGGCUCUAg-GUCCagCCu -5'
6360 3' -56.7 NC_001847.1 + 33519 0.69 0.734068
Target:  5'- cGGGCGccGCCGcGGAggcgCCGGGcgCGGGc -3'
miRNA:   3'- cCCCGUuuCGGC-UCUa---GGUCCa-GCCU- -5'
6360 3' -56.7 NC_001847.1 + 111251 0.73 0.51278
Target:  5'- cGGGuCGGAGgCG-GcgCCGGGUCGGAg -3'
miRNA:   3'- cCCC-GUUUCgGCuCuaGGUCCAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 100887 0.74 0.419986
Target:  5'- aGGGGCGcGGCCGGcGGgagaCgGGGUCGGGg -3'
miRNA:   3'- -CCCCGUuUCGGCU-CUa---GgUCCAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 100967 0.67 0.842493
Target:  5'- cGGGGCucggcGCCGAGcUCCgAGcGaCGGAa -3'
miRNA:   3'- -CCCCGuuu--CGGCUCuAGG-UC-CaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 45507 0.68 0.790836
Target:  5'- cGGGGCGGGcGCCGccg-CCGGGcggcgCGGAc -3'
miRNA:   3'- -CCCCGUUU-CGGCucuaGGUCCa----GCCU- -5'
6360 3' -56.7 NC_001847.1 + 134951 0.7 0.663965
Target:  5'- gGGGGCGGGGgCGGGggCgGGGgcccCGGGg -3'
miRNA:   3'- -CCCCGUUUCgGCUCuaGgUCCa---GCCU- -5'
6360 3' -56.7 NC_001847.1 + 98728 0.79 0.238198
Target:  5'- cGGGGcCGAAGCCGGGG-CCGGGgcCGGGg -3'
miRNA:   3'- -CCCC-GUUUCGGCUCUaGGUCCa-GCCU- -5'
6360 3' -56.7 NC_001847.1 + 111276 0.68 0.790836
Target:  5'- aGGcGGCGccGGGCCGGGGgcggcgcucggCCGGGggCGGGg -3'
miRNA:   3'- -CC-CCGU--UUCGGCUCUa----------GGUCCa-GCCU- -5'
6360 3' -56.7 NC_001847.1 + 101157 0.81 0.17714
Target:  5'- uGGGGcCGGGGCCGGGGcCgGGGUCGGGg -3'
miRNA:   3'- -CCCC-GUUUCGGCUCUaGgUCCAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 124220 0.7 0.684254
Target:  5'- cGGGCc-GGCCGAgGAUUCGGGcCGGc -3'
miRNA:   3'- cCCCGuuUCGGCU-CUAGGUCCaGCCu -5'
6360 3' -56.7 NC_001847.1 + 129321 0.68 0.772388
Target:  5'- cGGGCcu-GCCGGGcgCgGGGcCGGGg -3'
miRNA:   3'- cCCCGuuuCGGCUCuaGgUCCaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 121383 0.71 0.582432
Target:  5'- cGGGCAAGGCgGAGGaagaCCGGGggcaGGAg -3'
miRNA:   3'- cCCCGUUUCGgCUCUa---GGUCCag--CCU- -5'
6360 3' -56.7 NC_001847.1 + 98668 0.72 0.542283
Target:  5'- cGGGGcCGAAGCCGGGGccgaagCCGGGgccgaagcCGGGg -3'
miRNA:   3'- -CCCC-GUUUCGGCUCUa-----GGUCCa-------GCCU- -5'
6360 3' -56.7 NC_001847.1 + 104959 0.74 0.455938
Target:  5'- -aGGCGAGcGCCGGGcgCCAGGgcUCGGGg -3'
miRNA:   3'- ccCCGUUU-CGGCUCuaGGUCC--AGCCU- -5'
6360 3' -56.7 NC_001847.1 + 135027 0.74 0.420864
Target:  5'- cGGGCGGGGCCGGGGcgcggggcgccggacCCAGGggCGGAg -3'
miRNA:   3'- cCCCGUUUCGGCUCUa--------------GGUCCa-GCCU- -5'
6360 3' -56.7 NC_001847.1 + 85774 0.66 0.865857
Target:  5'- gGGGGCAGcGGCCGAuGcggugcgcGUCgAGGgugCGGGc -3'
miRNA:   3'- -CCCCGUU-UCGGCU-C--------UAGgUCCa--GCCU- -5'
6360 3' -56.7 NC_001847.1 + 121423 0.67 0.8433
Target:  5'- aGGGCGGAGCCGuuGAgcggcccgaccgccgCCGGGUUGu- -3'
miRNA:   3'- cCCCGUUUCGGCu-CUa--------------GGUCCAGCcu -5'
6360 3' -56.7 NC_001847.1 + 32038 0.67 0.825954
Target:  5'- cGGGGa--AGCCcccgcgaaAGGUCCGGGgcgCGGAg -3'
miRNA:   3'- -CCCCguuUCGGc-------UCUAGGUCCa--GCCU- -5'
6360 3' -56.7 NC_001847.1 + 130925 0.68 0.790836
Target:  5'- cGGGGCcAGGaCCGAGG-CCGGcgacGUUGGGc -3'
miRNA:   3'- -CCCCGuUUC-GGCUCUaGGUC----CAGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.