miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6360 3' -56.7 NC_001847.1 + 135027 0.74 0.420864
Target:  5'- cGGGCGGGGCCGGGGcgcggggcgccggacCCAGGggCGGAg -3'
miRNA:   3'- cCCCGUUUCGGCUCUa--------------GGUCCa-GCCU- -5'
6360 3' -56.7 NC_001847.1 + 134951 0.7 0.663965
Target:  5'- gGGGGCGGGGgCGGGggCgGGGgcccCGGGg -3'
miRNA:   3'- -CCCCGUUUCgGCUCuaGgUCCa---GCCU- -5'
6360 3' -56.7 NC_001847.1 + 134908 0.71 0.582432
Target:  5'- cGGGCGucgGGGCgCGAGGcCCGGGcUCGGGc -3'
miRNA:   3'- cCCCGU---UUCG-GCUCUaGGUCC-AGCCU- -5'
6360 3' -56.7 NC_001847.1 + 132615 0.67 0.834315
Target:  5'- cGGGaGCGccGCCG-GGUCCgAGGgaaGGAa -3'
miRNA:   3'- -CCC-CGUuuCGGCuCUAGG-UCCag-CCU- -5'
6360 3' -56.7 NC_001847.1 + 130925 0.68 0.790836
Target:  5'- cGGGGCcAGGaCCGAGG-CCGGcgacGUUGGGc -3'
miRNA:   3'- -CCCCGuUUC-GGCUCUaGGUC----CAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 129321 0.68 0.772388
Target:  5'- cGGGCcu-GCCGGGcgCgGGGcCGGGg -3'
miRNA:   3'- cCCCGuuuCGGCUCuaGgUCCaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 126105 0.68 0.781678
Target:  5'- gGGGGCGGAGCaCaGGAgCuCGGGUgGGGu -3'
miRNA:   3'- -CCCCGUUUCG-GcUCUaG-GUCCAgCCU- -5'
6360 3' -56.7 NC_001847.1 + 125384 0.67 0.817418
Target:  5'- gGGGGC---GCgCGAGGUCgAGGU-GGAc -3'
miRNA:   3'- -CCCCGuuuCG-GCUCUAGgUCCAgCCU- -5'
6360 3' -56.7 NC_001847.1 + 125239 0.81 0.172735
Target:  5'- gGGGGCGGGGcCCGAGA-CCAcgcGGUCGGGc -3'
miRNA:   3'- -CCCCGUUUC-GGCUCUaGGU---CCAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 124738 0.67 0.834315
Target:  5'- cGGGCGAGGCgGAGAgaggaCCGcGGcucgCGGGc -3'
miRNA:   3'- cCCCGUUUCGgCUCUa----GGU-CCa---GCCU- -5'
6360 3' -56.7 NC_001847.1 + 124220 0.7 0.684254
Target:  5'- cGGGCc-GGCCGAgGAUUCGGGcCGGc -3'
miRNA:   3'- cCCCGuuUCGGCU-CUAGGUCCaGCCu -5'
6360 3' -56.7 NC_001847.1 + 123561 0.7 0.663965
Target:  5'- cGGGGCuuGGGCCGGGG-CCgccgcgagcgGGGcCGGAc -3'
miRNA:   3'- -CCCCGu-UUCGGCUCUaGG----------UCCaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 123492 0.72 0.552244
Target:  5'- uGGGGCcgccgcaagcGGGGCCGGGG-CCAGGgcugccgCGGGc -3'
miRNA:   3'- -CCCCG----------UUUCGGCUCUaGGUCCa------GCCU- -5'
6360 3' -56.7 NC_001847.1 + 121423 0.67 0.8433
Target:  5'- aGGGCGGAGCCGuuGAgcggcccgaccgccgCCGGGUUGu- -3'
miRNA:   3'- cCCCGUUUCGGCu-CUa--------------GGUCCAGCcu -5'
6360 3' -56.7 NC_001847.1 + 121383 0.71 0.582432
Target:  5'- cGGGCAAGGCgGAGGaagaCCGGGggcaGGAg -3'
miRNA:   3'- cCCCGUUUCGgCUCUa---GGUCCag--CCU- -5'
6360 3' -56.7 NC_001847.1 + 119454 1.11 0.001736
Target:  5'- gGGGGCAAAGCCGAGAUCCAGGUCGGAg -3'
miRNA:   3'- -CCCCGUUUCGGCUCUAGGUCCAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 118908 0.8 0.186251
Target:  5'- cGGGGcCGGGGCCGAGG-CCGGGacgCGGAg -3'
miRNA:   3'- -CCCC-GUUUCGGCUCUaGGUCCa--GCCU- -5'
6360 3' -56.7 NC_001847.1 + 118831 0.75 0.401811
Target:  5'- aGGGcGCGGAGCCGAGGgcgcgagcgcgagUaagaCCGGGUUGGAu -3'
miRNA:   3'- -CCC-CGUUUCGGCUCU-------------A----GGUCCAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 118012 0.66 0.873233
Target:  5'- aGGaCGAAGCCGGGAgcgCCAG--CGGAa -3'
miRNA:   3'- cCCcGUUUCGGCUCUa--GGUCcaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 117043 0.66 0.865857
Target:  5'- gGGGGCuc-GCCGAGG---AGG-CGGAa -3'
miRNA:   3'- -CCCCGuuuCGGCUCUaggUCCaGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.