miRNA display CGI


Results 1 - 20 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 41286 0.66 0.739107
Target:  5'- -cAGCAGcgcGCCGGCGUagugcgcgacguuucCgGCGCCGccGGCc -3'
miRNA:   3'- acUCGUC---UGGCCGCA---------------GaCGCGGC--UCG- -5'
6361 3' -59.9 NC_001847.1 + 98560 0.66 0.739107
Target:  5'- aGAGCGGcguGCCgucGGCGUCcagguaggcgcgcgGCGCC-AGCg -3'
miRNA:   3'- aCUCGUC---UGG---CCGCAGa-------------CGCGGcUCG- -5'
6361 3' -59.9 NC_001847.1 + 39392 0.66 0.735268
Target:  5'- cGGGgAG-CCGGCGcCg--GCCGGGCu -3'
miRNA:   3'- aCUCgUCuGGCCGCaGacgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 21868 0.66 0.735268
Target:  5'- gGuGCGGGggcugCGGCGcgCUGCcgagGCCGAGCc -3'
miRNA:   3'- aCuCGUCUg----GCCGCa-GACG----CGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 31349 0.66 0.735268
Target:  5'- aGuGCGGcuucuacacgccGCCGGCGgagcGCGCCcuGAGCa -3'
miRNA:   3'- aCuCGUC------------UGGCCGCaga-CGCGG--CUCG- -5'
6361 3' -59.9 NC_001847.1 + 39385 0.66 0.735268
Target:  5'- aGAGCGG-CCcGCGcCgccccccGCGCCaGAGCg -3'
miRNA:   3'- aCUCGUCuGGcCGCaGa------CGCGG-CUCG- -5'
6361 3' -59.9 NC_001847.1 + 39439 0.66 0.735268
Target:  5'- aGAGCGG-CCcGCGcCgccccccGCGCCaGAGCg -3'
miRNA:   3'- aCUCGUCuGGcCGCaGa------CGCGG-CUCG- -5'
6361 3' -59.9 NC_001847.1 + 58061 0.66 0.735268
Target:  5'- cGGGCcgccGAUUGGCGcgCgcgcGCGCCGcAGCg -3'
miRNA:   3'- aCUCGu---CUGGCCGCa-Ga---CGCGGC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 64226 0.66 0.735268
Target:  5'- cGGGCGG--CGGCGcgaagCUGC-CCGAGUg -3'
miRNA:   3'- aCUCGUCugGCCGCa----GACGcGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 120401 0.66 0.735268
Target:  5'- cGAGCgcgAGGcCCGGCGcgCguauguggGCGCaaaGAGCa -3'
miRNA:   3'- aCUCG---UCU-GGCCGCa-Ga-------CGCGg--CUCG- -5'
6361 3' -59.9 NC_001847.1 + 132088 0.66 0.735268
Target:  5'- cGAGCAcaACCuGCGcCUGCggcuGCUGGGCg -3'
miRNA:   3'- aCUCGUc-UGGcCGCaGACG----CGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 31716 0.66 0.735268
Target:  5'- aGGcGCGGGCCGcGCG-CcGCuGCgGAGCg -3'
miRNA:   3'- aCU-CGUCUGGC-CGCaGaCG-CGgCUCG- -5'
6361 3' -59.9 NC_001847.1 + 53050 0.66 0.735268
Target:  5'- --cGCAGGCgcccuccggcgaCGGCGUCagacGCGCCGucGCu -3'
miRNA:   3'- acuCGUCUG------------GCCGCAGa---CGCGGCu-CG- -5'
6361 3' -59.9 NC_001847.1 + 59749 0.66 0.735268
Target:  5'- cGAGCucgacucgcuGGCC-GCGUCcgGUGCCGuGCc -3'
miRNA:   3'- aCUCGu---------CUGGcCGCAGa-CGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 75819 0.66 0.735268
Target:  5'- cGGGCuGguacggcgccGCCGGCG-CcGCGCCuGGCa -3'
miRNA:   3'- aCUCGuC----------UGGCCGCaGaCGCGGcUCG- -5'
6361 3' -59.9 NC_001847.1 + 78332 0.66 0.735268
Target:  5'- --cGCGGGcCCGGCuuggGCGCCGcGGCg -3'
miRNA:   3'- acuCGUCU-GGCCGcagaCGCGGC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 85028 0.66 0.735268
Target:  5'- cGAGgcCAG-CCGGCGcUCUaCGCCGcccGGCg -3'
miRNA:   3'- aCUC--GUCuGGCCGC-AGAcGCGGC---UCG- -5'
6361 3' -59.9 NC_001847.1 + 87349 0.66 0.735268
Target:  5'- gGAGCcGAUC-GCGg--GCGCCGAGg -3'
miRNA:   3'- aCUCGuCUGGcCGCagaCGCGGCUCg -5'
6361 3' -59.9 NC_001847.1 + 88551 0.66 0.735268
Target:  5'- cGAGgcCGcGCCGGCGgggCUGaCGCCcGGCg -3'
miRNA:   3'- aCUC--GUcUGGCCGCa--GAC-GCGGcUCG- -5'
6361 3' -59.9 NC_001847.1 + 106797 0.66 0.735268
Target:  5'- cGGGCGGAUgaCGGCcgcgCUGCccGCCG-GCg -3'
miRNA:   3'- aCUCGUCUG--GCCGca--GACG--CGGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.