miRNA display CGI


Results 41 - 60 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6361 3' -59.9 NC_001847.1 + 125737 0.72 0.351749
Target:  5'- gGGGUGGGCUGGCugggCUGgGCUGGGCu -3'
miRNA:   3'- aCUCGUCUGGCCGca--GACgCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 125516 0.77 0.182648
Target:  5'- -cGGCGGGCCGGCG-CgGCGgCGGGCg -3'
miRNA:   3'- acUCGUCUGGCCGCaGaCGCgGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 125463 0.73 0.314851
Target:  5'- cGGGCGGGUCGGCGgcagCUcGCGgCGGGCg -3'
miRNA:   3'- aCUCGUCUGGCCGCa---GA-CGCgGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 125197 0.66 0.715878
Target:  5'- gGGGCAGAa-GGCGcccgggCcGCGgCGAGCg -3'
miRNA:   3'- aCUCGUCUggCCGCa-----GaCGCgGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 124982 0.69 0.527027
Target:  5'- cGcAGCGGGCCGGC--CUGC-UCGGGCg -3'
miRNA:   3'- aC-UCGUCUGGCCGcaGACGcGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 124903 0.66 0.725612
Target:  5'- -aAGCGGGCcCGGCaggcGCGCCGGGg -3'
miRNA:   3'- acUCGUCUG-GCCGcagaCGCGGCUCg -5'
6361 3' -59.9 NC_001847.1 + 124564 0.73 0.307832
Target:  5'- aGAGCAG-CgCGGCGUCUGCGUacaGGucuGCg -3'
miRNA:   3'- aCUCGUCuG-GCCGCAGACGCGg--CU---CG- -5'
6361 3' -59.9 NC_001847.1 + 124544 0.69 0.555349
Target:  5'- gGGcGCGGGCCGGCGccggcccgcgcgCgcgggggggccgccgGCGCCGGGCc -3'
miRNA:   3'- aCU-CGUCUGGCCGCa-----------Ga--------------CGCGGCUCG- -5'
6361 3' -59.9 NC_001847.1 + 124437 0.68 0.616138
Target:  5'- -cGGCGcuuGGCCGGCGcgggCcGCGCCcGGGCg -3'
miRNA:   3'- acUCGU---CUGGCCGCa---GaCGCGG-CUCG- -5'
6361 3' -59.9 NC_001847.1 + 122134 0.67 0.646288
Target:  5'- --cGCGacGGCCGGCG-CgcaggGCGCCGcGCg -3'
miRNA:   3'- acuCGU--CUGGCCGCaGa----CGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 122102 0.71 0.44316
Target:  5'- aGAGCAGcGCCucagugGGCGgcaugCUGCGCCGucuacuGCu -3'
miRNA:   3'- aCUCGUC-UGG------CCGCa----GACGCGGCu-----CG- -5'
6361 3' -59.9 NC_001847.1 + 121393 0.66 0.696212
Target:  5'- gGAGgaAGACCGGgGgcaggagCUGCGUgGAGg -3'
miRNA:   3'- aCUCg-UCUGGCCgCa------GACGCGgCUCg -5'
6361 3' -59.9 NC_001847.1 + 120904 0.71 0.399929
Target:  5'- aGAGCGGGCuCGGCGUUUGCccucaccacGCCcccGGCc -3'
miRNA:   3'- aCUCGUCUG-GCCGCAGACG---------CGGc--UCG- -5'
6361 3' -59.9 NC_001847.1 + 120697 0.69 0.556333
Target:  5'- cGAGCAGcgcgGCCGcGCGcUCgGCGCCaaacagcgGAGCc -3'
miRNA:   3'- aCUCGUC----UGGC-CGC-AGaCGCGG--------CUCG- -5'
6361 3' -59.9 NC_001847.1 + 120401 0.66 0.735268
Target:  5'- cGAGCgcgAGGcCCGGCGcgCguauguggGCGCaaaGAGCa -3'
miRNA:   3'- aCUCG---UCU-GGCCGCa-Ga-------CGCGg--CUCG- -5'
6361 3' -59.9 NC_001847.1 + 119667 0.69 0.556333
Target:  5'- gGAGUAGua-GcGCGUCUgcGCGCCGuGCg -3'
miRNA:   3'- aCUCGUCuggC-CGCAGA--CGCGGCuCG- -5'
6361 3' -59.9 NC_001847.1 + 119179 0.66 0.714901
Target:  5'- gGGGCAGGCaugggaccgucgaUGGCGagcUCgucgGCGCCGcGGCc -3'
miRNA:   3'- aCUCGUCUG-------------GCCGC---AGa---CGCGGC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 119119 0.66 0.714901
Target:  5'- gGGGCAGGCauggggccgucgaUGGCGagcUCgucgGCGCCGcGGCc -3'
miRNA:   3'- aCUCGUCUG-------------GCCGC---AGa---CGCGGC-UCG- -5'
6361 3' -59.9 NC_001847.1 + 118897 0.68 0.616138
Target:  5'- gGGGCcgGGGCCGGgGcCgGgGCCGAGg -3'
miRNA:   3'- aCUCG--UCUGGCCgCaGaCgCGGCUCg -5'
6361 3' -59.9 NC_001847.1 + 118782 0.66 0.725612
Target:  5'- gUGAGCGGcACCGGCaGcCgccaGCGCCuccaGGCc -3'
miRNA:   3'- -ACUCGUC-UGGCCG-CaGa---CGCGGc---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.