miRNA display CGI


Results 21 - 40 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6362 5' -50.3 NC_001847.1 + 118049 1.11 0.006846
Target:  5'- gCUAACAUGGAGCGCCGCUUUUACGCGg -3'
miRNA:   3'- -GAUUGUACCUCGCGGCGAAAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 116680 0.66 0.994751
Target:  5'- ----uGUGGguccGGCGCUGCgg--GCGCGg -3'
miRNA:   3'- gauugUACC----UCGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 116162 0.69 0.950793
Target:  5'- gCUGGCGgccGcGGGCGCCGCggccGCGCu -3'
miRNA:   3'- -GAUUGUa--C-CUCGCGGCGaaaaUGCGc -5'
6362 5' -50.3 NC_001847.1 + 114944 0.7 0.920102
Target:  5'- uUGGCGgggcGGGGCGCCGCcc---CGCGg -3'
miRNA:   3'- gAUUGUa---CCUCGCGGCGaaaauGCGC- -5'
6362 5' -50.3 NC_001847.1 + 112979 0.7 0.920102
Target:  5'- -gAGCAggccGGcccgcuGCGCCgGCUUUUGCGCGc -3'
miRNA:   3'- gaUUGUa---CCu-----CGCGG-CGAAAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 110281 0.66 0.992927
Target:  5'- -----uUGG-GUGCCGUuaUUUUGCGCGu -3'
miRNA:   3'- gauuguACCuCGCGGCG--AAAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 106762 0.74 0.755346
Target:  5'- -cGGCGgggGGGGCGCCGUcuccgGCGCGa -3'
miRNA:   3'- gaUUGUa--CCUCGCGGCGaaaa-UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 106725 0.66 0.994751
Target:  5'- -cAGCGcGG-GCGCCGg--UUGCGCGc -3'
miRNA:   3'- gaUUGUaCCuCGCGGCgaaAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 106655 0.67 0.979204
Target:  5'- gCUAGCGgc-GGCGCCGCggcguccgcgGCGCGu -3'
miRNA:   3'- -GAUUGUaccUCGCGGCGaaaa------UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 106128 0.67 0.984308
Target:  5'- -cGGCGcGG-GCGCCGCUgccgccgGCGCc -3'
miRNA:   3'- gaUUGUaCCuCGCGGCGAaaa----UGCGc -5'
6362 5' -50.3 NC_001847.1 + 106072 0.7 0.920102
Target:  5'- -cGGCA-GGGGCGCCgGCgcc-GCGCGg -3'
miRNA:   3'- gaUUGUaCCUCGCGG-CGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 105027 0.66 0.991843
Target:  5'- -cGGCAguaGGccgccAGCGCCGCggcgcuggGCGCGg -3'
miRNA:   3'- gaUUGUa--CC-----UCGCGGCGaaaa----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 104724 0.67 0.986129
Target:  5'- --cGCGUGcGAGagccCGCCGCg---GCGCGg -3'
miRNA:   3'- gauUGUAC-CUC----GCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 103365 0.69 0.946331
Target:  5'- -gAACGUGGcggcggacgccAGCGCCGCgucuccgGCGCc -3'
miRNA:   3'- gaUUGUACC-----------UCGCGGCGaaaa---UGCGc -5'
6362 5' -50.3 NC_001847.1 + 102744 0.67 0.986129
Target:  5'- -gGACGgccgacGGGGCGUCGUgccgcgUGCGCGc -3'
miRNA:   3'- gaUUGUa-----CCUCGCGGCGaaa---AUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 102660 0.68 0.969375
Target:  5'- --cGCcgGGAGCgGCCGCgaggGCGgGg -3'
miRNA:   3'- gauUGuaCCUCG-CGGCGaaaaUGCgC- -5'
6362 5' -50.3 NC_001847.1 + 102617 0.72 0.85661
Target:  5'- -cAACAgaccGGGCGCCGCUauaUACGCGc -3'
miRNA:   3'- gaUUGUac--CUCGCGGCGAaa-AUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 101902 0.7 0.925874
Target:  5'- -cGGCAgcGGAgGCGCCGCggcgcccgGCGCGg -3'
miRNA:   3'- gaUUGUa-CCU-CGCGGCGaaaa----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 99449 0.66 0.98928
Target:  5'- -cAGCGUGGGaguugcgcagcGCGCCGCUcggggccaagaUcaGCGCGa -3'
miRNA:   3'- gaUUGUACCU-----------CGCGGCGA-----------AaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 98797 0.77 0.628864
Target:  5'- --cGCGUGGcGCGCCGCggc-GCGCGg -3'
miRNA:   3'- gauUGUACCuCGCGGCGaaaaUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.