Results 41 - 60 of 248 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6363 | 5' | -55 | NC_001847.1 | + | 52844 | 0.66 | 0.920953 |
Target: 5'- cGGGCGCC-GGUUAacacCAGCuccaGCAAGG-CGu -3' miRNA: 3'- -CCCGUGGuUCAGU----GUCG----CGUUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 62620 | 0.66 | 0.923196 |
Target: 5'- cGGGCGCCGGguagaagaaggccccGUCcaGCAGCGUuucGUCGu -3' miRNA: 3'- -CCCGUGGUU---------------CAG--UGUCGCGuucCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 81569 | 0.66 | 0.926487 |
Target: 5'- aGGCAuCCAcGUCGCccagcgcggcgAGCGCGGcGUCGg -3' miRNA: 3'- cCCGU-GGUuCAGUG-----------UCGCGUUcCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 4666 | 0.66 | 0.926487 |
Target: 5'- -cGCGCCGcGUCgaGCAGgGCcGGGUCu -3' miRNA: 3'- ccCGUGGUuCAG--UGUCgCGuUCCAGc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 32982 | 0.66 | 0.926487 |
Target: 5'- aGGCGCCGGG--GCGG-GCAGGG-CGg -3' miRNA: 3'- cCCGUGGUUCagUGUCgCGUUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 80238 | 0.66 | 0.926487 |
Target: 5'- cGGGCcacguuGCCGGGUCgACGGCgugccgcaGCAGGGcCu -3' miRNA: 3'- -CCCG------UGGUUCAG-UGUCG--------CGUUCCaGc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 82885 | 0.66 | 0.926487 |
Target: 5'- cGGGCACgCGAGcacgaaGCGGCGCGucuuGUCa -3' miRNA: 3'- -CCCGUG-GUUCag----UGUCGCGUuc--CAGc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 95764 | 0.66 | 0.915173 |
Target: 5'- gGGGCgGCgCGGGcCGCucuGGCGCGGGGggCGg -3' miRNA: 3'- -CCCG-UG-GUUCaGUG---UCGCGUUCCa-GC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 95710 | 0.66 | 0.915173 |
Target: 5'- gGGGCgGCgCGGGcCGCucuGGCGCGGGGggCGg -3' miRNA: 3'- -CCCG-UG-GUUCaGUG---UCGCGUUCCa-GC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 95656 | 0.66 | 0.915173 |
Target: 5'- gGGGCgGCgCGGGcCGCucuGGCGCGGGGggCGg -3' miRNA: 3'- -CCCG-UG-GUUCaGUG---UCGCGUUCCa-GC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 54319 | 0.66 | 0.909148 |
Target: 5'- -uGCccccCCAAGUCGCGGCGCGcGGccuUCGc -3' miRNA: 3'- ccCGu---GGUUCAGUGUCGCGUuCC---AGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 116415 | 0.66 | 0.909148 |
Target: 5'- uGGGCcCCGGGcCGC-GCGCuuGGGcUCGa -3' miRNA: 3'- -CCCGuGGUUCaGUGuCGCGu-UCC-AGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 35606 | 0.66 | 0.909148 |
Target: 5'- cGGUACaucgcaaacgaAAGcgCGCGGCGCGGGGcUCGg -3' miRNA: 3'- cCCGUGg----------UUCa-GUGUCGCGUUCC-AGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 47532 | 0.66 | 0.914581 |
Target: 5'- cGGGCGCCAAagccgccGUCucaACGGCGCc-GGccUCGg -3' miRNA: 3'- -CCCGUGGUU-------CAG---UGUCGCGuuCC--AGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 22369 | 0.66 | 0.915173 |
Target: 5'- gGGGCGCC-AGUCcuCGGgGCAgaAGG-CGc -3' miRNA: 3'- -CCCGUGGuUCAGu-GUCgCGU--UCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 92441 | 0.66 | 0.915173 |
Target: 5'- -aGCAUCAAucGUgcgacaCACGGCGCAGGGcCGg -3' miRNA: 3'- ccCGUGGUU--CA------GUGUCGCGUUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 12021 | 0.66 | 0.915173 |
Target: 5'- gGGGCGCCGgcgaGGUCGUAGgcaucCGCAGGGg-- -3' miRNA: 3'- -CCCGUGGU----UCAGUGUC-----GCGUUCCagc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 29578 | 0.66 | 0.915173 |
Target: 5'- cGGCGCCGGcGcCGCcGCGCcGGGcCGg -3' miRNA: 3'- cCCGUGGUU-CaGUGuCGCGuUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 31930 | 0.66 | 0.915173 |
Target: 5'- cGGGCcCCGgucucGGUCGgAGCGC--GGUCc -3' miRNA: 3'- -CCCGuGGU-----UCAGUgUCGCGuuCCAGc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 49960 | 0.66 | 0.915173 |
Target: 5'- cGGCGCCGAG-UAC-GCGCA-GGcCGu -3' miRNA: 3'- cCCGUGGUUCaGUGuCGCGUuCCaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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