miRNA display CGI


Results 81 - 100 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 124715 0.67 0.894377
Target:  5'- cGGGCGCgGGGgcgGCAGCGCGaaccgcgcgggggaGGGcCGu -3'
miRNA:   3'- -CCCGUGgUUCag-UGUCGCGU--------------UCCaGC- -5'
6363 5' -55 NC_001847.1 + 3264 0.67 0.895712
Target:  5'- gGGGCGCCGgcgccgcgcggccGGcgagCACGGCGCGcAGcUCGg -3'
miRNA:   3'- -CCCGUGGU-------------UCa---GUGUCGCGU-UCcAGC- -5'
6363 5' -55 NC_001847.1 + 12571 0.67 0.882656
Target:  5'- cGGGCGCCGcGUaCGCGGCGCcc--UCGc -3'
miRNA:   3'- -CCCGUGGUuCA-GUGUCGCGuuccAGC- -5'
6363 5' -55 NC_001847.1 + 16577 0.67 0.882656
Target:  5'- cGGGacaGCgGGGUCgggGCGGCGUggGGUg- -3'
miRNA:   3'- -CCCg--UGgUUCAG---UGUCGCGuuCCAgc -5'
6363 5' -55 NC_001847.1 + 116065 0.67 0.875452
Target:  5'- cGGGCACCGGGgcgCACuuuCGCAcGG-CGc -3'
miRNA:   3'- -CCCGUGGUUCa--GUGuc-GCGUuCCaGC- -5'
6363 5' -55 NC_001847.1 + 48987 0.67 0.889632
Target:  5'- cGGCcucACCGGGggaggggC-CGGCGCGAGGUUa -3'
miRNA:   3'- cCCG---UGGUUCa------GuGUCGCGUUCCAGc -5'
6363 5' -55 NC_001847.1 + 93123 0.67 0.868024
Target:  5'- aGGCGCCGcgccGG-CACGGCGCAGcuUCGu -3'
miRNA:   3'- cCCGUGGU----UCaGUGUCGCGUUccAGC- -5'
6363 5' -55 NC_001847.1 + 134044 0.67 0.868024
Target:  5'- gGGGCACgCGgcgucuccagAGUCACAG-GCGGGGa-- -3'
miRNA:   3'- -CCCGUG-GU----------UCAGUGUCgCGUUCCagc -5'
6363 5' -55 NC_001847.1 + 28139 0.67 0.875452
Target:  5'- uGGGC-CCGAGgacUGCAGCGaCGccGGGUCc -3'
miRNA:   3'- -CCCGuGGUUCa--GUGUCGC-GU--UCCAGc -5'
6363 5' -55 NC_001847.1 + 130952 0.67 0.875452
Target:  5'- uGGGC-CCGAGgacUGCAGCGaCGccGGGUCc -3'
miRNA:   3'- -CCCGuGGUUCa--GUGUCGC-GU--UCCAGc -5'
6363 5' -55 NC_001847.1 + 11184 0.67 0.875452
Target:  5'- gGGGCuGCCGcuGGUCcgcGCGGgGCu-GGUCGa -3'
miRNA:   3'- -CCCG-UGGU--UCAG---UGUCgCGuuCCAGC- -5'
6363 5' -55 NC_001847.1 + 100837 0.67 0.881946
Target:  5'- cGGGCggcuccgGCCAGGgcCGgAGCGCcggcccgccgGGGGUCGg -3'
miRNA:   3'- -CCCG-------UGGUUCa-GUgUCGCG----------UUCCAGC- -5'
6363 5' -55 NC_001847.1 + 4608 0.67 0.882656
Target:  5'- aGGCgGCCAcgucGUCGCAGCGCucuGGGa-- -3'
miRNA:   3'- cCCG-UGGUu---CAGUGUCGCGu--UCCagc -5'
6363 5' -55 NC_001847.1 + 40597 0.67 0.875452
Target:  5'- cGGcGUACUcg--CGCAGCGUggGGUUGg -3'
miRNA:   3'- -CC-CGUGGuucaGUGUCGCGuuCCAGC- -5'
6363 5' -55 NC_001847.1 + 90477 0.67 0.875452
Target:  5'- cGGCucGCC-GGUCACGGUGCA-GG-CGg -3'
miRNA:   3'- cCCG--UGGuUCAGUGUCGCGUuCCaGC- -5'
6363 5' -55 NC_001847.1 + 125427 0.67 0.882656
Target:  5'- uGGCAagCGAGUgGCcGCGCAGGGcgCGu -3'
miRNA:   3'- cCCGUg-GUUCAgUGuCGCGUUCCa-GC- -5'
6363 5' -55 NC_001847.1 + 34238 0.67 0.889632
Target:  5'- aGGC-CCAguacgcGG-CGCGGCGCGAGG-CGc -3'
miRNA:   3'- cCCGuGGU------UCaGUGUCGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 125080 0.67 0.875452
Target:  5'- gGGGCGCUggGcccgCGCGGC-CAAGauGUCGu -3'
miRNA:   3'- -CCCGUGGuuCa---GUGUCGcGUUC--CAGC- -5'
6363 5' -55 NC_001847.1 + 129339 0.67 0.875452
Target:  5'- cGGcGCGCCAAGcgcaagCGCGGUGCcGGGccCGg -3'
miRNA:   3'- -CC-CGUGGUUCa-----GUGUCGCGuUCCa-GC- -5'
6363 5' -55 NC_001847.1 + 63103 0.67 0.875452
Target:  5'- cGGGUAcgccCCGGGgccgcCGCcGCGCAcGGGUCGg -3'
miRNA:   3'- -CCCGU----GGUUCa----GUGuCGCGU-UCCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.