miRNA display CGI


Results 61 - 80 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 32088 0.8 0.257361
Target:  5'- uGGGCGCCGGgcGUCGgGGCGCGAGGccCGg -3'
miRNA:   3'- -CCCGUGGUU--CAGUgUCGCGUUCCa-GC- -5'
6363 5' -55 NC_001847.1 + 32130 0.7 0.763943
Target:  5'- cGGGCGCCGGGggCGgGG-GCGGGGgCGg -3'
miRNA:   3'- -CCCGUGGUUCa-GUgUCgCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 32199 0.69 0.801326
Target:  5'- gGGGC-CCGAGgccCGCGG-GCGGGGcCGg -3'
miRNA:   3'- -CCCGuGGUUCa--GUGUCgCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 32373 0.69 0.770641
Target:  5'- gGGGCGCCGGcGUCGCGgGCGUcgcgccuugcguggGGGGUUu -3'
miRNA:   3'- -CCCGUGGUU-CAGUGU-CGCG--------------UUCCAGc -5'
6363 5' -55 NC_001847.1 + 32982 0.66 0.926487
Target:  5'- aGGCGCCGGG--GCGG-GCAGGG-CGg -3'
miRNA:   3'- cCCGUGGUUCagUGUCgCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 33018 0.7 0.719619
Target:  5'- gGGGCGCgCGGGgcgaggcgcggaCGCGGCGCAggaguuuauugaccGGGUCGc -3'
miRNA:   3'- -CCCGUG-GUUCa-----------GUGUCGCGU--------------UCCAGC- -5'
6363 5' -55 NC_001847.1 + 33534 0.68 0.836196
Target:  5'- aGGCGCCGGG-CGCGgGCGCcgaaGAGG-CGg -3'
miRNA:   3'- cCCGUGGUUCaGUGU-CGCG----UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 34238 0.67 0.889632
Target:  5'- aGGC-CCAguacgcGG-CGCGGCGCGAGG-CGc -3'
miRNA:   3'- cCCGuGGU------UCaGUGUCGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 34286 0.72 0.62195
Target:  5'- uGGGCGCCGcGcUCGCGGCcgucaGCGAGGcuUCGg -3'
miRNA:   3'- -CCCGUGGUuC-AGUGUCG-----CGUUCC--AGC- -5'
6363 5' -55 NC_001847.1 + 34642 0.67 0.868024
Target:  5'- -cGCGCCGAGgccgaGCGGCGCGccgAGGgggCGg -3'
miRNA:   3'- ccCGUGGUUCag---UGUCGCGU---UCCa--GC- -5'
6363 5' -55 NC_001847.1 + 35520 0.67 0.889632
Target:  5'- -cGCGCCGAG-CGCAuccucgGCGAGGUCGu -3'
miRNA:   3'- ccCGUGGUUCaGUGUcg----CGUUCCAGC- -5'
6363 5' -55 NC_001847.1 + 35606 0.66 0.909148
Target:  5'- cGGUACaucgcaaacgaAAGcgCGCGGCGCGGGGcUCGg -3'
miRNA:   3'- cCCGUGg----------UUCa-GUGUCGCGUUCC-AGC- -5'
6363 5' -55 NC_001847.1 + 35976 0.75 0.461767
Target:  5'- aGGGCGCCAAGgcgcgCGCAGcCGCGcugcAGG-CGg -3'
miRNA:   3'- -CCCGUGGUUCa----GUGUC-GCGU----UCCaGC- -5'
6363 5' -55 NC_001847.1 + 37032 0.65 0.931777
Target:  5'- gGGGCGCCGGGcUCGCAcucuagccuGgGCuGGGggCGg -3'
miRNA:   3'- -CCCGUGGUUC-AGUGU---------CgCGuUCCa-GC- -5'
6363 5' -55 NC_001847.1 + 37325 0.72 0.601234
Target:  5'- -cGCGCCGAG-CACAGCGCuggcgugcGGUCa -3'
miRNA:   3'- ccCGUGGUUCaGUGUCGCGuu------CCAGc -5'
6363 5' -55 NC_001847.1 + 38135 0.78 0.325978
Target:  5'- cGGGCACCGAGUCuucgcGCGGCGCGccgccccgAGGgacCGg -3'
miRNA:   3'- -CCCGUGGUUCAG-----UGUCGCGU--------UCCa--GC- -5'
6363 5' -55 NC_001847.1 + 40004 0.65 0.931777
Target:  5'- cGGCACCcccAAG-CGCAGCGCc-GG-CGa -3'
miRNA:   3'- cCCGUGG---UUCaGUGUCGCGuuCCaGC- -5'
6363 5' -55 NC_001847.1 + 40170 0.69 0.792193
Target:  5'- uGGGCGuCCuGGUCGCGGCucuGCGAGuaGUUGg -3'
miRNA:   3'- -CCCGU-GGuUCAGUGUCG---CGUUC--CAGC- -5'
6363 5' -55 NC_001847.1 + 40597 0.67 0.875452
Target:  5'- cGGcGUACUcg--CGCAGCGUggGGUUGg -3'
miRNA:   3'- -CC-CGUGGuucaGUGUCGCGuuCCAGC- -5'
6363 5' -55 NC_001847.1 + 41070 0.68 0.822585
Target:  5'- cGGGCAgCAAGUCccgcagggugucgggGgugaugguagcCGGCGCAcuaGGGUCGa -3'
miRNA:   3'- -CCCGUgGUUCAG---------------U-----------GUCGCGU---UCCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.