Results 1 - 20 of 663 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6364 | 3' | -64.8 | NC_001847.1 | + | 71299 | 0.66 | 0.51842 |
Target: 5'- cGCCCCCCGCGcGC--AGgAAAGCgCaCGu -3' miRNA: 3'- -CGGGGGGCGC-CGgcUCgUUUCGgG-GC- -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 40058 | 0.66 | 0.51842 |
Target: 5'- cGCCCCCCGCcacGCC-AGC---GCCUCu -3' miRNA: 3'- -CGGGGGGCGc--CGGcUCGuuuCGGGGc -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 107472 | 0.66 | 0.51842 |
Target: 5'- aGCCCgaCGCGccgcGUCGAGCAGGGCCg-- -3' miRNA: 3'- -CGGGggGCGC----CGGCUCGUUUCGGggc -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 102814 | 0.66 | 0.51842 |
Target: 5'- -nCCUCCGCGccgcGCCGcGCG-GGCCCCc -3' miRNA: 3'- cgGGGGGCGC----CGGCuCGUuUCGGGGc -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 29373 | 0.66 | 0.51842 |
Target: 5'- aCCgCgCgGCGGCCGGagcugccgcgcGCGAGGCCCUc -3' miRNA: 3'- cGGgG-GgCGCCGGCU-----------CGUUUCGGGGc -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 133979 | 0.66 | 0.51842 |
Target: 5'- gGCCUUCugCGCGGCCGcGCugccGGAGCCgCGc -3' miRNA: 3'- -CGGGGG--GCGCCGGCuCG----UUUCGGgGC- -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 91617 | 0.66 | 0.51842 |
Target: 5'- uCUCCUCGCGGCUGcGGCugcGGCUgCGg -3' miRNA: 3'- cGGGGGGCGCCGGC-UCGuu-UCGGgGC- -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 85909 | 0.66 | 0.51842 |
Target: 5'- cGCCaCCCCGCcguuugcGUgGAGCAccaaucagGAcGCCCCGu -3' miRNA: 3'- -CGG-GGGGCGc------CGgCUCGU--------UU-CGGGGC- -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 31166 | 0.66 | 0.51842 |
Target: 5'- gGCCUUCugCGCGGCCGcGCugccGGAGCCgCGc -3' miRNA: 3'- -CGGGGG--GCGCCGGCuCG----UUUCGGgGC- -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 130952 | 0.66 | 0.51842 |
Target: 5'- uGCCUgCgCGCGGCCcacGGGCGcgcGGCCCa- -3' miRNA: 3'- -CGGGgG-GCGCCGG---CUCGUu--UCGGGgc -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 109330 | 0.66 | 0.51842 |
Target: 5'- aGCCUgCC-CGGCCGAcgcgGCGGAGCagCUCGa -3' miRNA: 3'- -CGGGgGGcGCCGGCU----CGUUUCG--GGGC- -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 46255 | 0.66 | 0.51842 |
Target: 5'- cGCCCCCgGCGG--GAGCc--GCCgCCGc -3' miRNA: 3'- -CGGGGGgCGCCggCUCGuuuCGG-GGC- -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 115110 | 0.66 | 0.51842 |
Target: 5'- cGCCCagggCgGCGGCCGcAGgGccGCCCUa -3' miRNA: 3'- -CGGGg---GgCGCCGGC-UCgUuuCGGGGc -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 103233 | 0.66 | 0.51842 |
Target: 5'- aGCCgCggCCGCGGCCGugaucugcggcGGCAuccgcgcgacGGGCUCCGc -3' miRNA: 3'- -CGGgG--GGCGCCGGC-----------UCGU----------UUCGGGGC- -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 55759 | 0.66 | 0.51842 |
Target: 5'- aGCCCCaCgGCGaGCCGcGCGcuGCCgCa -3' miRNA: 3'- -CGGGG-GgCGC-CGGCuCGUuuCGGgGc -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 4659 | 0.66 | 0.51842 |
Target: 5'- aGCCCgaCGCGccgcGUCGAGCAGGGCCg-- -3' miRNA: 3'- -CGGGggGCGC----CGGCUCGUUUCGGggc -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 12589 | 0.66 | 0.517493 |
Target: 5'- cGCCCUCgcacucgUGCGGCCagcgaccGGCAGGGUCCgGg -3' miRNA: 3'- -CGGGGG-------GCGCCGGc------UCGUUUCGGGgC- -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 40245 | 0.66 | 0.517493 |
Target: 5'- aGCCCcggcuggCCCGUGGCgGuGCGGuAGUCCuCGa -3' miRNA: 3'- -CGGG-------GGGCGCCGgCuCGUU-UCGGG-GC- -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 105782 | 0.66 | 0.515639 |
Target: 5'- gGCCgCCCGCGGUCGccgcuguuuucaacGGCc--GCCCgCGc -3' miRNA: 3'- -CGGgGGGCGCCGGC--------------UCGuuuCGGG-GC- -5' |
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6364 | 3' | -64.8 | NC_001847.1 | + | 128772 | 0.66 | 0.509172 |
Target: 5'- cGCCUUCUGCuGCCGcAGCGGcuacGCCCgCGg -3' miRNA: 3'- -CGGGGGGCGcCGGC-UCGUUu---CGGG-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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