miRNA display CGI


Results 1 - 20 of 663 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6364 3' -64.8 NC_001847.1 + 71299 0.66 0.51842
Target:  5'- cGCCCCCCGCGcGC--AGgAAAGCgCaCGu -3'
miRNA:   3'- -CGGGGGGCGC-CGgcUCgUUUCGgG-GC- -5'
6364 3' -64.8 NC_001847.1 + 40058 0.66 0.51842
Target:  5'- cGCCCCCCGCcacGCC-AGC---GCCUCu -3'
miRNA:   3'- -CGGGGGGCGc--CGGcUCGuuuCGGGGc -5'
6364 3' -64.8 NC_001847.1 + 107472 0.66 0.51842
Target:  5'- aGCCCgaCGCGccgcGUCGAGCAGGGCCg-- -3'
miRNA:   3'- -CGGGggGCGC----CGGCUCGUUUCGGggc -5'
6364 3' -64.8 NC_001847.1 + 102814 0.66 0.51842
Target:  5'- -nCCUCCGCGccgcGCCGcGCG-GGCCCCc -3'
miRNA:   3'- cgGGGGGCGC----CGGCuCGUuUCGGGGc -5'
6364 3' -64.8 NC_001847.1 + 29373 0.66 0.51842
Target:  5'- aCCgCgCgGCGGCCGGagcugccgcgcGCGAGGCCCUc -3'
miRNA:   3'- cGGgG-GgCGCCGGCU-----------CGUUUCGGGGc -5'
6364 3' -64.8 NC_001847.1 + 133979 0.66 0.51842
Target:  5'- gGCCUUCugCGCGGCCGcGCugccGGAGCCgCGc -3'
miRNA:   3'- -CGGGGG--GCGCCGGCuCG----UUUCGGgGC- -5'
6364 3' -64.8 NC_001847.1 + 91617 0.66 0.51842
Target:  5'- uCUCCUCGCGGCUGcGGCugcGGCUgCGg -3'
miRNA:   3'- cGGGGGGCGCCGGC-UCGuu-UCGGgGC- -5'
6364 3' -64.8 NC_001847.1 + 85909 0.66 0.51842
Target:  5'- cGCCaCCCCGCcguuugcGUgGAGCAccaaucagGAcGCCCCGu -3'
miRNA:   3'- -CGG-GGGGCGc------CGgCUCGU--------UU-CGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 31166 0.66 0.51842
Target:  5'- gGCCUUCugCGCGGCCGcGCugccGGAGCCgCGc -3'
miRNA:   3'- -CGGGGG--GCGCCGGCuCG----UUUCGGgGC- -5'
6364 3' -64.8 NC_001847.1 + 130952 0.66 0.51842
Target:  5'- uGCCUgCgCGCGGCCcacGGGCGcgcGGCCCa- -3'
miRNA:   3'- -CGGGgG-GCGCCGG---CUCGUu--UCGGGgc -5'
6364 3' -64.8 NC_001847.1 + 109330 0.66 0.51842
Target:  5'- aGCCUgCC-CGGCCGAcgcgGCGGAGCagCUCGa -3'
miRNA:   3'- -CGGGgGGcGCCGGCU----CGUUUCG--GGGC- -5'
6364 3' -64.8 NC_001847.1 + 46255 0.66 0.51842
Target:  5'- cGCCCCCgGCGG--GAGCc--GCCgCCGc -3'
miRNA:   3'- -CGGGGGgCGCCggCUCGuuuCGG-GGC- -5'
6364 3' -64.8 NC_001847.1 + 115110 0.66 0.51842
Target:  5'- cGCCCagggCgGCGGCCGcAGgGccGCCCUa -3'
miRNA:   3'- -CGGGg---GgCGCCGGC-UCgUuuCGGGGc -5'
6364 3' -64.8 NC_001847.1 + 103233 0.66 0.51842
Target:  5'- aGCCgCggCCGCGGCCGugaucugcggcGGCAuccgcgcgacGGGCUCCGc -3'
miRNA:   3'- -CGGgG--GGCGCCGGC-----------UCGU----------UUCGGGGC- -5'
6364 3' -64.8 NC_001847.1 + 55759 0.66 0.51842
Target:  5'- aGCCCCaCgGCGaGCCGcGCGcuGCCgCa -3'
miRNA:   3'- -CGGGG-GgCGC-CGGCuCGUuuCGGgGc -5'
6364 3' -64.8 NC_001847.1 + 4659 0.66 0.51842
Target:  5'- aGCCCgaCGCGccgcGUCGAGCAGGGCCg-- -3'
miRNA:   3'- -CGGGggGCGC----CGGCUCGUUUCGGggc -5'
6364 3' -64.8 NC_001847.1 + 12589 0.66 0.517493
Target:  5'- cGCCCUCgcacucgUGCGGCCagcgaccGGCAGGGUCCgGg -3'
miRNA:   3'- -CGGGGG-------GCGCCGGc------UCGUUUCGGGgC- -5'
6364 3' -64.8 NC_001847.1 + 40245 0.66 0.517493
Target:  5'- aGCCCcggcuggCCCGUGGCgGuGCGGuAGUCCuCGa -3'
miRNA:   3'- -CGGG-------GGGCGCCGgCuCGUU-UCGGG-GC- -5'
6364 3' -64.8 NC_001847.1 + 105782 0.66 0.515639
Target:  5'- gGCCgCCCGCGGUCGccgcuguuuucaacGGCc--GCCCgCGc -3'
miRNA:   3'- -CGGgGGGCGCCGGC--------------UCGuuuCGGG-GC- -5'
6364 3' -64.8 NC_001847.1 + 128772 0.66 0.509172
Target:  5'- cGCCUUCUGCuGCCGcAGCGGcuacGCCCgCGg -3'
miRNA:   3'- -CGGGGGGCGcCGGC-UCGUUu---CGGG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.