Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6364 | 5' | -56.1 | NC_001847.1 | + | 55502 | 0.68 | 0.795403 |
Target: 5'- gGC-AGUGGuucgGCg--GCGAGCGCGu -3' miRNA: 3'- gCGuUCACCua--CGagaCGCUCGCGCu -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 53584 | 0.7 | 0.635151 |
Target: 5'- gGCGAcGUGGAUGCcuuUUUGCGGGCcacggugGCGGg -3' miRNA: 3'- gCGUU-CACCUACG---AGACGCUCG-------CGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 51213 | 0.66 | 0.855212 |
Target: 5'- gCGCAcuucgAGcGGGcccUGCUC-GCGGGCGCGc -3' miRNA: 3'- -GCGU-----UCaCCU---ACGAGaCGCUCGCGCu -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 49797 | 0.66 | 0.885011 |
Target: 5'- aCGCccccGGGUGCgcugCUGCuGGGCGCGc -3' miRNA: 3'- -GCGuucaCCUACGa---GACG-CUCGCGCu -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 49725 | 0.7 | 0.687768 |
Target: 5'- uGCAAGUGGgcGC-CgGCGAG-GCGGu -3' miRNA: 3'- gCGUUCACCuaCGaGaCGCUCgCGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 47850 | 0.67 | 0.804469 |
Target: 5'- uCGCAGGaGGucgcGUGCUgcGCGGGCGCGc -3' miRNA: 3'- -GCGUUCaCC----UACGAgaCGCUCGCGCu -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 43663 | 0.66 | 0.868304 |
Target: 5'- gGCGAGUGuGUGCUCUGCaaucuucugcucacGccGGCGCa- -3' miRNA: 3'- gCGUUCACcUACGAGACG--------------C--UCGCGcu -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 42526 | 0.71 | 0.594808 |
Target: 5'- cCGUccGUGGAaaagcUGCUCgGUGAGgGCGAg -3' miRNA: 3'- -GCGuuCACCU-----ACGAGaCGCUCgCGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 41639 | 0.7 | 0.675454 |
Target: 5'- gGCGAGUGGGUGCggauccaccCGAcGCGCGGc -3' miRNA: 3'- gCGUUCACCUACGagac-----GCU-CGCGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 37113 | 0.69 | 0.728233 |
Target: 5'- cCGCuGGUGuucAUGCUCUG-GGGCGCGc -3' miRNA: 3'- -GCGuUCACc--UACGAGACgCUCGCGCu -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 36662 | 0.67 | 0.84723 |
Target: 5'- uCGCAGGUGGggGCUU--CGAuGCGCc- -3' miRNA: 3'- -GCGUUCACCuaCGAGacGCU-CGCGcu -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 34136 | 0.68 | 0.747993 |
Target: 5'- cCGC-GGUGGccGCcgCgGCGAGCGCGc -3' miRNA: 3'- -GCGuUCACCuaCGa-GaCGCUCGCGCu -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 33180 | 0.69 | 0.73816 |
Target: 5'- aGCGGcUGGccgGCUCUGCGcccgacuuggcGGCGCGGg -3' miRNA: 3'- gCGUUcACCua-CGAGACGC-----------UCGCGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 32796 | 0.66 | 0.877893 |
Target: 5'- gCGCGAGUccGAgcGCUCUuugagcgcgcGCGAGCGCGc -3' miRNA: 3'- -GCGUUCAc-CUa-CGAGA----------CGCUCGCGCu -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 32007 | 0.68 | 0.767336 |
Target: 5'- aCGCGGgcGUGGAgcgcgaaGCUCcgGCGGGgCGCGGg -3' miRNA: 3'- -GCGUU--CACCUa------CGAGa-CGCUC-GCGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 30579 | 0.69 | 0.737171 |
Target: 5'- cCGCGgcgcGGUGGAguacCUCUGCGcgcggcuggccgcGGCGCGGc -3' miRNA: 3'- -GCGU----UCACCUac--GAGACGC-------------UCGCGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 22481 | 0.66 | 0.863753 |
Target: 5'- uCGCAGGUGGGgcaaggcuggccgugGCUCaugGCG-GCgGCGGg -3' miRNA: 3'- -GCGUUCACCUa--------------CGAGa--CGCuCG-CGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 21861 | 0.75 | 0.402108 |
Target: 5'- aGCAGGUGG-UGCgggggCUGCG-GCGCGc -3' miRNA: 3'- gCGUUCACCuACGa----GACGCuCGCGCu -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 20071 | 0.71 | 0.605129 |
Target: 5'- aGCGGcGUGGcgGCUCccGCG-GCGCGGc -3' miRNA: 3'- gCGUU-CACCuaCGAGa-CGCuCGCGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 19862 | 0.69 | 0.709144 |
Target: 5'- cCGCu-GUGGAcacGCUCaucauggcggcgcugGCGGGCGCGAg -3' miRNA: 3'- -GCGuuCACCUa--CGAGa--------------CGCUCGCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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