miRNA display CGI


Results 1 - 20 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 99889 0.66 0.811313
Target:  5'- gCGCGGCUgAUC-----UCCGCCgCGCGCc -3'
miRNA:   3'- -GCGCCGG-UAGaaccuAGGUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 70283 0.66 0.811313
Target:  5'- aCGCGcGCCuggcgGGGUCgcggCGCgCCGCGCu -3'
miRNA:   3'- -GCGC-CGGuagaaCCUAG----GUG-GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 30041 0.66 0.811313
Target:  5'- cCGCGGCCG---UGGGcgacgUUGCCgGCGCg -3'
miRNA:   3'- -GCGCCGGUagaACCUa----GGUGGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 64683 0.66 0.811313
Target:  5'- uGCGGgacaCCAUgUUuu-UCCugCCGCGCg -3'
miRNA:   3'- gCGCC----GGUAgAAccuAGGugGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 62031 0.66 0.811313
Target:  5'- gGCGGCUAcCUccg--CCACCCGgGCc -3'
miRNA:   3'- gCGCCGGUaGAaccuaGGUGGGCgCG- -5'
6365 5' -58.6 NC_001847.1 + 12600 0.66 0.811313
Target:  5'- aGCGGCUGUCggaaGGG-CC-CCCGCu- -3'
miRNA:   3'- gCGCCGGUAGaa--CCUaGGuGGGCGcg -5'
6365 5' -58.6 NC_001847.1 + 74163 0.66 0.811313
Target:  5'- gGCGGCgCcUCUcggcgUGGGgcCCAUgCCGCGCg -3'
miRNA:   3'- gCGCCG-GuAGA-----ACCUa-GGUG-GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 61057 0.66 0.811313
Target:  5'- aCGCGGCCAUCagccccaGGGUgU-CUgGCGCg -3'
miRNA:   3'- -GCGCCGGUAGaa-----CCUAgGuGGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 71719 0.66 0.811313
Target:  5'- gCGcCGGCCcgCc-GGcgCCGCgUGCGCu -3'
miRNA:   3'- -GC-GCCGGuaGaaCCuaGGUGgGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 85726 0.66 0.811313
Target:  5'- aGUGGCUGggcguuagCUUGGccGUCagcCCCGCGCc -3'
miRNA:   3'- gCGCCGGUa-------GAACC--UAGgu-GGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 86603 0.66 0.811313
Target:  5'- uGCgGGCCAUUgcugcUGG--CCGCgCCGCGUa -3'
miRNA:   3'- gCG-CCGGUAGa----ACCuaGGUG-GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 32491 0.66 0.811313
Target:  5'- uCGCGGCCGcUCccGGcgcgUCACCCcgagacGCGCg -3'
miRNA:   3'- -GCGCCGGU-AGaaCCua--GGUGGG------CGCG- -5'
6365 5' -58.6 NC_001847.1 + 65673 0.66 0.811313
Target:  5'- -cCGGCCAgca-GGAgccccgccgCCGCCgCGCGCg -3'
miRNA:   3'- gcGCCGGUagaaCCUa--------GGUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 69694 0.66 0.811313
Target:  5'- gCGgGGCCGgcgCUcGG-UCCGCggCGCGCg -3'
miRNA:   3'- -GCgCCGGUa--GAaCCuAGGUGg-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 115843 0.66 0.811313
Target:  5'- cCGCGGCCGcgcucguuUgUUGG--CgGCCCGcCGCa -3'
miRNA:   3'- -GCGCCGGU--------AgAACCuaGgUGGGC-GCG- -5'
6365 5' -58.6 NC_001847.1 + 51281 0.66 0.802613
Target:  5'- cCGCGGCgCGcUCggGGAagUgGCCCGCGa -3'
miRNA:   3'- -GCGCCG-GU-AGaaCCUa-GgUGGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 30075 0.66 0.802613
Target:  5'- cCGCGuGCCGccCggGGAcuaccacaCGCCCGCGCc -3'
miRNA:   3'- -GCGC-CGGUa-GaaCCUag------GUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 27988 0.66 0.802613
Target:  5'- cCGCGGCCGgggcGGAggCGgCCGCGg -3'
miRNA:   3'- -GCGCCGGUagaaCCUagGUgGGCGCg -5'
6365 5' -58.6 NC_001847.1 + 3474 0.66 0.802613
Target:  5'- gCGCGGCCA---UGGcGUCCccgACCgGCGg -3'
miRNA:   3'- -GCGCCGGUagaACC-UAGG---UGGgCGCg -5'
6365 5' -58.6 NC_001847.1 + 21357 0.66 0.802613
Target:  5'- uGCGcGCCGUCggcggcucGGG-CCGCCuCGgGCg -3'
miRNA:   3'- gCGC-CGGUAGaa------CCUaGGUGG-GCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.