miRNA display CGI


Results 1 - 20 of 678 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6366 3' -61.6 NC_001847.1 + 7195 0.66 0.69751
Target:  5'- uUGGagcgCGUCcucgagcgcggcuggGCCGuCCAUGG-CGCUGCa -3'
miRNA:   3'- gACCa---GCAG---------------CGGC-GGUGCCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 53299 0.66 0.694616
Target:  5'- -cGcUCGaUCGCCGCCAgugcggcgggcgacaGGACGgCGCg -3'
miRNA:   3'- gaCcAGC-AGCGGCGGUg--------------CCUGCgGCG- -5'
6366 3' -61.6 NC_001847.1 + 28609 0.66 0.693651
Target:  5'- -aGG-CGgcCGCgCGCUACGcGGCGgCCGCg -3'
miRNA:   3'- gaCCaGCa-GCG-GCGGUGC-CUGC-GGCG- -5'
6366 3' -61.6 NC_001847.1 + 18699 0.66 0.693651
Target:  5'- -cGGcccgCGUCaCCGCCA---GCGCCGCg -3'
miRNA:   3'- gaCCa---GCAGcGGCGGUgccUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 43121 0.66 0.693651
Target:  5'- -cGGUgcccgcagaCGgCGCgGgcCCGCGGGCGCUGCg -3'
miRNA:   3'- gaCCA---------GCaGCGgC--GGUGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 46890 0.66 0.693651
Target:  5'- ----cCGUCcCCGCC-CGGcgcccGCGCCGCg -3'
miRNA:   3'- gaccaGCAGcGGCGGuGCC-----UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 115490 0.66 0.693651
Target:  5'- uCUGGgc-UUGCC-CCuggaaGGGCGCCGCg -3'
miRNA:   3'- -GACCagcAGCGGcGGug---CCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 67457 0.66 0.693651
Target:  5'- -aGGUCcagcgCGCgCGCgGCGGcCGCgGCg -3'
miRNA:   3'- gaCCAGca---GCG-GCGgUGCCuGCGgCG- -5'
6366 3' -61.6 NC_001847.1 + 131422 0.66 0.693651
Target:  5'- -aGG-CGgcCGCgCGCUACGcGGCGgCCGCg -3'
miRNA:   3'- gaCCaGCa-GCG-GCGGUGC-CUGC-GGCG- -5'
6366 3' -61.6 NC_001847.1 + 57542 0.66 0.693651
Target:  5'- ----gCGgCGCCGCCagaaACGGGUGCCGCc -3'
miRNA:   3'- gaccaGCaGCGGCGG----UGCCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 65853 0.66 0.693651
Target:  5'- -cGGUCcgcccgcaCGCCGCguagaggaagccCGCGGcCGCCGCc -3'
miRNA:   3'- gaCCAGca------GCGGCG------------GUGCCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 69708 0.66 0.693651
Target:  5'- -cGGUC--CGCgGCgCGCGGcUGCCGCc -3'
miRNA:   3'- gaCCAGcaGCGgCG-GUGCCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 123276 0.66 0.693651
Target:  5'- gUGGcuuuuauacgcUCG-CGCCGcCCGCaGGGCGgCGCc -3'
miRNA:   3'- gACC-----------AGCaGCGGC-GGUG-CCUGCgGCG- -5'
6366 3' -61.6 NC_001847.1 + 108073 0.66 0.693651
Target:  5'- gUGGgcgCGgUGCCGCC-CgGGGgGCUGCg -3'
miRNA:   3'- gACCa--GCaGCGGCGGuG-CCUgCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 102754 0.66 0.693651
Target:  5'- -cGGggCGUCG-UGCCGCGuGCGCgCGCc -3'
miRNA:   3'- gaCCa-GCAGCgGCGGUGCcUGCG-GCG- -5'
6366 3' -61.6 NC_001847.1 + 97562 0.66 0.693651
Target:  5'- -cGGcCGccgcaGCCGCaGCGGccaGCGCCGCc -3'
miRNA:   3'- gaCCaGCag---CGGCGgUGCC---UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 72645 0.66 0.693651
Target:  5'- -cGGcUGUgGCCGCCaccccGCGGcCGcCCGCc -3'
miRNA:   3'- gaCCaGCAgCGGCGG-----UGCCuGC-GGCG- -5'
6366 3' -61.6 NC_001847.1 + 41942 0.66 0.693651
Target:  5'- cCUGGagG-CGCaCGCUGCaGAUGUCGCu -3'
miRNA:   3'- -GACCagCaGCG-GCGGUGcCUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 28369 0.66 0.693651
Target:  5'- -cGG-CGcccUCGCCGCCggagACGGcgcccccccCGCCGCg -3'
miRNA:   3'- gaCCaGC---AGCGGCGG----UGCCu--------GCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 99696 0.66 0.693651
Target:  5'- ----gCGcCGCgGCCGCGucGCGCCGCa -3'
miRNA:   3'- gaccaGCaGCGgCGGUGCc-UGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.