miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6366 5' -49.6 NC_001847.1 + 46530 0.66 0.996759
Target:  5'- cGGggGGCGgCgGCgGCgcgcGCGAGGUCc -3'
miRNA:   3'- -CCuuCUGUgGaCGgUGa---UGUUCUAGa -5'
6366 5' -49.6 NC_001847.1 + 21907 0.66 0.996759
Target:  5'- aGGAGACgGCCgagGCCGCggGCGAGGc-- -3'
miRNA:   3'- cCUUCUG-UGGa--CGGUGa-UGUUCUaga -5'
6366 5' -49.6 NC_001847.1 + 124720 0.66 0.996759
Target:  5'- aGGAGACgGCCgagGCCGCggGCGAGGc-- -3'
miRNA:   3'- cCUUCUG-UGGa--CGGUGa-UGUUCUaga -5'
6366 5' -49.6 NC_001847.1 + 116095 0.66 0.995982
Target:  5'- gGGAcGACgaugacgacgccggGCCUGCCG--GCGGGGUCa -3'
miRNA:   3'- -CCUuCUG--------------UGGACGGUgaUGUUCUAGa -5'
6366 5' -49.6 NC_001847.1 + 49597 0.66 0.994742
Target:  5'- cGAGGACAUUUGCCGCgcagUAGGcgCg -3'
miRNA:   3'- cCUUCUGUGGACGGUGau--GUUCuaGa -5'
6366 5' -49.6 NC_001847.1 + 113861 0.66 0.994742
Target:  5'- --uGGAUGCCgcgGuCCGCUACaAAGAUCg -3'
miRNA:   3'- ccuUCUGUGGa--C-GGUGAUG-UUCUAGa -5'
6366 5' -49.6 NC_001847.1 + 76257 0.66 0.993879
Target:  5'- uGGAGGcGCACCUcGCCA--ACGAGA-CUa -3'
miRNA:   3'- -CCUUC-UGUGGA-CGGUgaUGUUCUaGA- -5'
6366 5' -49.6 NC_001847.1 + 119091 0.66 0.993879
Target:  5'- -aGAGGCGCCgcgGCCGCcGCGGGGc-- -3'
miRNA:   3'- ccUUCUGUGGa--CGGUGaUGUUCUaga -5'
6366 5' -49.6 NC_001847.1 + 2036 0.67 0.992905
Target:  5'- ---cGGCGCCggccgugGCCACgAUAGGGUCUu -3'
miRNA:   3'- ccuuCUGUGGa------CGGUGaUGUUCUAGA- -5'
6366 5' -49.6 NC_001847.1 + 94356 0.67 0.991926
Target:  5'- aGGAGGACGCuggcgcggcggcguCUGCCGCgcGCAcgugacgcuuuuuucGGAUCg -3'
miRNA:   3'- -CCUUCUGUG--------------GACGGUGa-UGU---------------UCUAGa -5'
6366 5' -49.6 NC_001847.1 + 129428 0.67 0.991811
Target:  5'- ---cGACGCCcGCCuGCUGCGGGGUg- -3'
miRNA:   3'- ccuuCUGUGGaCGG-UGAUGUUCUAga -5'
6366 5' -49.6 NC_001847.1 + 108651 0.67 0.991811
Target:  5'- aGAAGugGCCgggGCCGCggACGAGuuUCc -3'
miRNA:   3'- cCUUCugUGGa--CGGUGa-UGUUCu-AGa -5'
6366 5' -49.6 NC_001847.1 + 30361 0.67 0.990588
Target:  5'- gGGGAGGCGCUggcggcGCCGCccgGCGAGGa-- -3'
miRNA:   3'- -CCUUCUGUGGa-----CGGUGa--UGUUCUaga -5'
6366 5' -49.6 NC_001847.1 + 74697 0.67 0.990588
Target:  5'- cGGccGGCGCUuuUGCCugUACGGGGcgCUg -3'
miRNA:   3'- -CCuuCUGUGG--ACGGugAUGUUCUa-GA- -5'
6366 5' -49.6 NC_001847.1 + 133174 0.67 0.990588
Target:  5'- gGGGAGGCGCUggcggcGCCGCccgGCGAGGa-- -3'
miRNA:   3'- -CCUUCUGUGGa-----CGGUGa--UGUUCUaga -5'
6366 5' -49.6 NC_001847.1 + 130267 0.67 0.989226
Target:  5'- cGggGGC-CCUGCCGCUGCc------ -3'
miRNA:   3'- cCuuCUGuGGACGGUGAUGuucuaga -5'
6366 5' -49.6 NC_001847.1 + 133662 0.67 0.989226
Target:  5'- -cGAGGCGCC-GCCGCUGC-GGcUCUg -3'
miRNA:   3'- ccUUCUGUGGaCGGUGAUGuUCuAGA- -5'
6366 5' -49.6 NC_001847.1 + 56612 0.67 0.989226
Target:  5'- cGAAGAgGCCgagGCCGCgguCGAGcgCg -3'
miRNA:   3'- cCUUCUgUGGa--CGGUGau-GUUCuaGa -5'
6366 5' -49.6 NC_001847.1 + 27454 0.67 0.989226
Target:  5'- cGggGGC-CCUGCCGCUGCc------ -3'
miRNA:   3'- cCuuCUGuGGACGGUGAUGuucuaga -5'
6366 5' -49.6 NC_001847.1 + 132141 0.67 0.989226
Target:  5'- uGGgcGGCGCugCUGCCGC-GCAGGGUg- -3'
miRNA:   3'- -CCuuCUGUG--GACGGUGaUGUUCUAga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.