miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6367 3' -52.1 NC_001847.1 + 135025 0.67 0.950312
Target:  5'- cGCGGGCGGggccgggGCgCGGGGcgCCgGACc -3'
miRNA:   3'- aCGUCCGUCaa-----CG-GUUUCuaGGgUUG- -5'
6367 3' -52.1 NC_001847.1 + 134240 0.68 0.919262
Target:  5'- gGCGGGCGGcgGCCGgcGG-CCgCGGCg -3'
miRNA:   3'- aCGUCCGUCaaCGGUuuCUaGG-GUUG- -5'
6367 3' -52.1 NC_001847.1 + 134169 0.66 0.972155
Target:  5'- gUGCGGGCcGgcGCau-AGAcgCCCGGCg -3'
miRNA:   3'- -ACGUCCGuCaaCGguuUCUa-GGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 133925 0.69 0.886111
Target:  5'- cUGCGGGCGGcgcgcGCUGGAGcuggcgCCCGACg -3'
miRNA:   3'- -ACGUCCGUCaa---CGGUUUCua----GGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 132935 0.66 0.958572
Target:  5'- cGCuGGCGGccuacUGCCGccccGAGGUCgCGGCg -3'
miRNA:   3'- aCGuCCGUCa----ACGGU----UUCUAGgGUUG- -5'
6367 3' -52.1 NC_001847.1 + 132580 0.68 0.913156
Target:  5'- cGCAGGCGcccgcGCCGAAGAcagCCCGc- -3'
miRNA:   3'- aCGUCCGUcaa--CGGUUUCUa--GGGUug -5'
6367 3' -52.1 NC_001847.1 + 128800 0.68 0.900152
Target:  5'- cGCGGcGCGGUUGCCGccGGggcaCCCGcguACg -3'
miRNA:   3'- aCGUC-CGUCAACGGUuuCUa---GGGU---UG- -5'
6367 3' -52.1 NC_001847.1 + 127941 0.66 0.954569
Target:  5'- aGCGGGCGGcgGCCGcGGcugCCUAAa -3'
miRNA:   3'- aCGUCCGUCaaCGGUuUCua-GGGUUg -5'
6367 3' -52.1 NC_001847.1 + 127294 0.66 0.962326
Target:  5'- cUGCAGGCGccaccGgcggUGCCGGAGAcacggcgaCCGGCg -3'
miRNA:   3'- -ACGUCCGU-----Ca---ACGGUUUCUag------GGUUG- -5'
6367 3' -52.1 NC_001847.1 + 126780 0.66 0.967175
Target:  5'- gGCGuuGGUGGUUGCCAuGGGccggcuuggcgccagUCCCAGa -3'
miRNA:   3'- aCGU--CCGUCAACGGUuUCU---------------AGGGUUg -5'
6367 3' -52.1 NC_001847.1 + 124934 0.66 0.965837
Target:  5'- aGCGGGCGc--GCCcuGGG-CCCGGCg -3'
miRNA:   3'- aCGUCCGUcaaCGGuuUCUaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 124647 0.7 0.85507
Target:  5'- aGCAGcGCGGggccGUCGGGGAagCCCAGCu -3'
miRNA:   3'- aCGUC-CGUCaa--CGGUUUCUa-GGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 124266 0.76 0.529487
Target:  5'- cGCAGGCGGUcUGCCuGGGcgCCCGc- -3'
miRNA:   3'- aCGUCCGUCA-ACGGuUUCuaGGGUug -5'
6367 3' -52.1 NC_001847.1 + 120254 0.68 0.900152
Target:  5'- cUGCAGGCGGgcuuccgUGUCGGGGcUUUCGACc -3'
miRNA:   3'- -ACGUCCGUCa------ACGGUUUCuAGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 119574 0.7 0.820435
Target:  5'- cUGCGGGCAGcggcgGCCGcGG--CCCGACg -3'
miRNA:   3'- -ACGUCCGUCaa---CGGUuUCuaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 118955 0.68 0.925102
Target:  5'- cGCGGGcCAGUU-CCGAuucgGGGUCCgCGGCc -3'
miRNA:   3'- aCGUCC-GUCAAcGGUU----UCUAGG-GUUG- -5'
6367 3' -52.1 NC_001847.1 + 118140 0.73 0.679487
Target:  5'- cUGCugaucGGCGccGUUGCCAAGGAcgUCCUGACg -3'
miRNA:   3'- -ACGu----CCGU--CAACGGUUUCU--AGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 116847 0.67 0.941021
Target:  5'- gGCuGGCcGUgcacGCCGAAGAguuuccaCCCAGCc -3'
miRNA:   3'- aCGuCCGuCAa---CGGUUUCUa------GGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 116761 0.67 0.940529
Target:  5'- cGCAGGCgAGgacGCCGAGGcAUCgggcccgCCGACg -3'
miRNA:   3'- aCGUCCG-UCaa-CGGUUUC-UAG-------GGUUG- -5'
6367 3' -52.1 NC_001847.1 + 115083 0.66 0.958572
Target:  5'- cGCAGGCAGcgagcgcauuuUUGCCc--GcgCCCAGg -3'
miRNA:   3'- aCGUCCGUC-----------AACGGuuuCuaGGGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.