Results 1 - 20 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6367 | 3' | -52.1 | NC_001847.1 | + | 68857 | 0.67 | 0.938029 |
Target: 5'- cGCgAGGCGGcggcgugcgccggGCCGAAGAggccuccccggCCCAGCa -3' miRNA: 3'- aCG-UCCGUCaa-----------CGGUUUCUa----------GGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 25128 | 0.66 | 0.954569 |
Target: 5'- aGCGGGCGGcgGCCGcGGcugCCUAAa -3' miRNA: 3'- aCGUCCGUCaaCGGUuUCua-GGGUUg -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 49842 | 0.67 | 0.950312 |
Target: 5'- cUGCAGGCGGccgUGCUGcuGcuGUCCCAc- -3' miRNA: 3'- -ACGUCCGUCa--ACGGUuuC--UAGGGUug -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 32212 | 0.67 | 0.950312 |
Target: 5'- cGCGGGCGGggccgggGCgCGGGGcgCCgGACc -3' miRNA: 3'- aCGUCCGUCaa-----CG-GUUUCuaGGgUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 80236 | 0.67 | 0.945798 |
Target: 5'- cGCGGGCcacGUUGCC--GGGUCgaCGGCg -3' miRNA: 3'- aCGUCCGu--CAACGGuuUCUAGg-GUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 54272 | 0.67 | 0.945798 |
Target: 5'- cGCGGGCGuGcUGCCGGAcGGcCUCGACg -3' miRNA: 3'- aCGUCCGU-CaACGGUUU-CUaGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 57664 | 0.67 | 0.945798 |
Target: 5'- gGCcGGCGGgccggGCCG-GGcgCCCGGCg -3' miRNA: 3'- aCGuCCGUCaa---CGGUuUCuaGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 90493 | 0.67 | 0.945798 |
Target: 5'- gUGCAGGCGGggcagcaGCCuccGAUgCCCAGa -3' miRNA: 3'- -ACGUCCGUCaa-----CGGuuuCUA-GGGUUg -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 18348 | 0.67 | 0.941021 |
Target: 5'- cGCAGucGCGGUcGCCcAAGAUCgUCGGCg -3' miRNA: 3'- aCGUC--CGUCAaCGGuUUCUAG-GGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 17039 | 0.66 | 0.956201 |
Target: 5'- cGCuGGCGGUccggaacaugucgcuUucGCUAAAGAgCCCGACg -3' miRNA: 3'- aCGuCCGUCA---------------A--CGGUUUCUaGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 30122 | 0.66 | 0.958572 |
Target: 5'- cGCuGGCGGccuacUGCCGccccGAGGUCgCGGCg -3' miRNA: 3'- aCGuCCGUCa----ACGGU----UUCUAGgGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 115083 | 0.66 | 0.958572 |
Target: 5'- cGCAGGCAGcgagcgcauuuUUGCCc--GcgCCCAGg -3' miRNA: 3'- aCGUCCGUC-----------AACGGuuuCuaGGGUUg -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 64269 | 0.66 | 0.972155 |
Target: 5'- cGCAGGCGGUUuGUac-AGc-CCCAGCg -3' miRNA: 3'- aCGUCCGUCAA-CGguuUCuaGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 47525 | 0.66 | 0.972155 |
Target: 5'- cGCAGccCGGgcGCCAAAGccgccGUCUCAACg -3' miRNA: 3'- aCGUCc-GUCaaCGGUUUC-----UAGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 23967 | 0.66 | 0.967175 |
Target: 5'- gGCGuuGGUGGUUGCCAuGGGccggcuuggcgccagUCCCAGa -3' miRNA: 3'- aCGU--CCGUCAACGGUuUCU---------------AGGGUUg -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 42741 | 0.66 | 0.965837 |
Target: 5'- cGCGGGCGGcgggGCgGAcagcAGAUCCagGACg -3' miRNA: 3'- aCGUCCGUCaa--CGgUU----UCUAGGg-UUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 22121 | 0.66 | 0.965837 |
Target: 5'- aGCGGGCGc--GCCcuGGG-CCCGGCg -3' miRNA: 3'- aCGUCCGUcaaCGGuuUCUaGGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 15145 | 0.66 | 0.965837 |
Target: 5'- gGCAGcGCGcuguaguugacGUUGCCAAAGG--CCGGCa -3' miRNA: 3'- aCGUC-CGU-----------CAACGGUUUCUagGGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 127294 | 0.66 | 0.962326 |
Target: 5'- cUGCAGGCGccaccGgcggUGCCGGAGAcacggcgaCCGGCg -3' miRNA: 3'- -ACGUCCGU-----Ca---ACGGUUUCUag------GGUUG- -5' |
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6367 | 3' | -52.1 | NC_001847.1 | + | 1107 | 0.66 | 0.958572 |
Target: 5'- cGCGGGCGGcgccGCCGcGGccUCCAGCa -3' miRNA: 3'- aCGUCCGUCaa--CGGUuUCuaGGGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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